Ctenopharyngodon idella (grass carp): 127513416
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Entry
127513416 CDS
T08802
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04010
MAPK signaling pathway
cide04137
Mitophagy - animal
cide04141
Protein processing in endoplasmic reticulum
cide04210
Apoptosis
cide04217
Necroptosis
cide04621
NOD-like receptor signaling pathway
cide04622
RIG-I-like receptor signaling pathway
cide04920
Adipocytokine signaling pathway
cide05132
Salmonella infection
cide05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127513416
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
127513416
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
127513416
09143 Cell growth and death
04210 Apoptosis
127513416
04217 Necroptosis
127513416
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
127513416
04622 RIG-I-like receptor signaling pathway
127513416
09152 Endocrine system
04920 Adipocytokine signaling pathway
127513416
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127513416
09171 Infectious disease: bacterial
05132 Salmonella infection
127513416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127513416
04121 Ubiquitin system [BR:
cide04121
]
127513416
Enzymes [BR:
cide01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127513416
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
127513416
Ubiquitin system [BR:
cide04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
127513416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
zf-C3HC4
TRAF3_RING
zf-RING_4
zf-C3HC4_2
ADIP
zf-RING_5
zf-C3HC4_4
Paramyxo_NS_C
TMF_DNA_bd
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
127513416
NCBI-ProteinID:
XP_051751128
LinkDB
All DBs
Position
5:complement(10353641..10381028)
Genome browser
AA seq
543 aa
AA seq
DB search
MISTAGTAGKWKAMARPSLPSSLDSTLPGISREVLSVSMEPKYQCQQCKEILRKPFQAQC
GHRFCVFCFKQLTSSGPIPCEACRAEGIFEEAMSMLNITVAFPDNAARREIDSLPAKCPN
DGCSWSGTLKDYEGQHEGRCDFERVKCEACQAVILLSEKDRHNERECEARTLNCKYCKVT
FNFKEIKAHDEICQKFPMQCKDCGKKKIPREKFQEHTKSCAKSKSACQFSEIGCRAVVDN
GKQQEHEQTSVMEHLRLMLSVLSSVRLRAEGAGEWQEDSGLGLYRGPEDAPPAGPNAAAH
NAGRGGGPGVQQKVTALENIVCVLNREVERSALTLEALSRQHRLDQEKIENLSNKVRQLE
RTLTMRDLQLAESEQSLRELQFCTYDGVFIWKIADFSRRRQDAVGGRAPAMFSPAPFFCS
SAFYSSKYGYKMCLRLYLNGDGTGRGTHLSLFFVVMRGKYDALLKWPFSQKVTLMLLDQN
NREHIIDAFRPDVSSTSFQRPISEMNIASGCPLFCPLAKLAGKSSYLRDDTIFIKAIVDL
TGL
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcactgctggcactgcgggtaaatggaaggcaatggcacgtccatctttacca
tcctcattggactccacattgcctgggatatctcgagaagtgttgtccgtgtccatggaa
ccaaaatatcaatgccagcaatgcaaagagattcttaggaaacctttccaagcacagtgt
ggacatcgcttctgtgtgttctgtttcaaacaactcaccagctcagggcccataccctgc
gaagcctgtcgtgcagagggtatatttgaagaggcaatgtctatgctcaatattacagtg
gcatttcctgataatgcagcacgaagagaaattgatagcttgcctgccaaatgtccaaat
gatggttgtagttggtctggtacattgaaagactatgagggtcaacatgaaggtcgttgt
gactttgaacgtgtaaaatgtgaagcatgccaagcagtcatcttgcttagcgagaaagat
cgccacaatgagcgggaatgcgaggccagaaccctgaactgcaaatactgcaaggtcaca
ttcaactttaaggaaattaaggcccatgatgaaatatgtcagaaatttcctatgcaatgc
aaagactgtggtaaaaagaaaatccccagagagaagtttcaggagcacaccaaatcttgt
gcaaagtccaagtcggcatgccagttcagtgagattggctgcagggcagtggttgacaat
ggtaagcagcaggagcatgagcagaccagtgtgatggagcatttgcgtcttatgctatct
gtgctgtcctctgtgcgcctgcgagccgagggggctggagagtggcaggaagattccggg
ctgggattgtatcgcggacctgaagatgcacctccggcggggcctaatgctgccgcccat
aatgcaggaagaggaggtggtcctggtgtgcagcagaaagtcacagctttggagaacata
gtgtgtgtgttgaatagagaggtggaacgttcagccctcaccctggaggcactatcccgg
caacatcggctagaccaggaaaagatcgagaatttgtcaaataaggtgcgacagctggaa
cggactttaaccatgcgagacctgcagttagcagaatccgagcagtctttgcgggagctg
cagttttgcacatacgatggagttttcatttggaaaatagcagacttctctcgacgcaga
caagatgcagtggggggccgagcacctgccatgttctcacctgcacctttcttctgttct
tcagcattctactccagtaaatatgggtataagatgtgtctgagactctacctgaatggt
gacggcacaggtcggggcactcacctctccctgttctttgtggtcatgagaggcaaatac
gatgcactgctgaagtggcccttcagccagaaggtgacattgatgctgttggaccagaac
aacagagagcacatcattgatgcctttaggcctgatgtaagctccacatccttccagaga
cccatcagtgagatgaacattgctagcggttgtcctctgttctgccccctcgccaagctg
gcaggcaaaagctcgtatctgagagatgacaccatatttattaaagccatagtcgacctc
actggcttataa
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integrated database retrieval system
