Ctenopharyngodon idella (grass carp): 127515905 Help Entry 127515905         CDS       T08802                                  Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism cide  Ctenopharyngodon idella (grass carp) Pathway cide04010   MAPK signaling pathway cide04120   Ubiquitin mediated proteolysis cide04140   Autophagy - animal cide04144   Endocytosis cide04620   Toll-like receptor signaling pathway cide04621   NOD-like receptor signaling pathway cide04622   RIG-I-like receptor signaling pathway cide05132   Salmonella infection cide05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:cide00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     127515905  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     127515905  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     127515905    04140 Autophagy - animal     127515905  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     127515905    04621 NOD-like receptor signaling pathway     127515905    04622 RIG-I-like receptor signaling pathway     127515905  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     127515905   09171 Infectious disease: bacterial    05132 Salmonella infection     127515905  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cide04131]     127515905    04121 Ubiquitin system [BR:cide04121]     127515905 Enzymes [BR:cide01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      127515905 Membrane trafficking [BR:cide04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     127515905 Ubiquitin system [BR:cide04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     127515905 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4 zf-C3HC4_2 zf-RING_2 zf-C3HC4_3 zf-RING_UBOX TRAF3_RING zf-C3HC4_4 zf-RING_5 DM Sina_ZnF TRAF6_Z2 zf-TRAF_2 RING_XB3-XBAT31 U-box DUF4472 DUF4748 zf-RING_11 Motif Other DBs NCBI-GeneID:  127515905 NCBI-ProteinID:  XP_051756020 LinkDB All DBs Position 7:complement(18398280..18404492) Genome browser AA seq 542 aa AA seqDB search MACSDMEKSSLDDACCDGAFSSCAAAMEKERDSYLSPTENPSTISVSSSVTPDQQGYDVE FDPPLESKYECPICLMGLRSAVQTPCGHRFCNSCIRKSIRDTGQKCPVDNEVLLEEQLFP DNFAKREILSLTVRCPNEGCSDKMELRQLERHVSQCKFATVPCPQCLESVRKSHLDEHKS QQCLQRLMTCPACAGSFVYAKKQIHEQICPFANTVCEYCEMELIRDQLALHCDTDCLKAP VACTFSTFGCREKMPRNELAQHMQEFTQMHMRYMAEFLRSQSLNSCLMPSVAAHSSSDER GASSRAADSCHCKQELLNLRETVLELEGRLVRQDQQIRELCIHNETQKNQVTELRRKLSS LEEATRELEAQQYQGVYVWRLENFSLHLRNQEAGQPIVLHSPPFYTGRPGYKLCLRLHLQ TPSAPRCSNYISLFVHTMQGEFDSQLSWPFQGTIRLAVLDQVEGQHHVEVMETKPDLQAF QRPTVQRNPKGFGYVTFLHLQALRQRGFVKEDVLLVRCEVTPRFDASLRREGVQPRGPEP SL NT seq 1629 nt NT seq  +upstreamnt  +downstreamnt atggcttgcagcgacatggagaagtccagccttgatgatgcctgctgtgatggtgcgttc tccagttgtgcagcagccatggagaaagagagagactcatatctgagcccgacagagaac ccctccaccatcagtgtctcttctagtgtcaccccagaccagcaaggctatgatgtagag tttgaccctccgctagagagcaagtatgagtgcccaatctgtctaatgggtcttcgctcg gcagtccagacaccgtgtggacatcgattctgcaactcatgcatcaggaagtccatcagg gacacagggcagaaatgtccagttgacaatgaggtgctgctcgaggaacagctcttccct gataactttgccaaaagagagatcctttcactcactgtcagatgtcctaatgaaggatgc agtgataaaatggagttgcgccaactggagagacacgtgtctcagtgtaagtttgcgaca gtgccatgccctcagtgtctggagtctgttcgtaagagccatctggatgaacacaagagc cagcagtgcttacagcggcttatgacctgtcctgcctgtgcagggagttttgtgtatgct aagaaacagattcatgaacagatttgtcctttcgccaatacagtgtgtgaatattgcgaa atggagctaattcgggatcagttggcattgcactgtgacacagactgtttgaaagctcct gtagcctgtactttcagcacttttggttgtcgtgaaaagatgccgagaaatgaacttgct cagcacatgcaggaatttacacagatgcacatgcgttacatggcggagtttctgcgcagc cagtctctcaatagctgcctaatgccatcagttgccgcccattcatcgtcagacgaacgt ggtgcctcttcccgggcggcagattcttgccactgtaaacaggagctgttaaaccttagg gagactgttctggagctggagggtcggctggtgcgtcaagatcagcagattcgggagctg tgcatccacaacgagacacagaaaaaccaagtcaccgaactacggcgaaagctgagctca ctggaggaggcaacccgagagctagaagcccagcagtaccaaggcgtctacgtgtggcgc ttggagaacttctcacttcacctgcgcaaccaagaggccggtcagcccatagtcctccac agcccacctttctacacgggccggccggggtacaaactctgcctccgactgcatctccaa acccccagcgctcctcgctgttccaactacatctcgcttttcgtgcacactatgcagggt gagtttgacagccagctttcctggcccttccagggcacgatccgactggcagtgttggac caggtcgaggggcagcaccatgtggaagtgatggagaccaagccggacctacaggccttc cagaggcccaccgtgcagcgcaaccccaagggttttggctacgttactttcctgcaccta caggcgttgcggcagcgtggctttgtgaaagaggacgtgctgttggtgcgctgtgaggtc acaccacgattcgatgctagcctcaggagggagggggtccaacctcggggcccagaacct tcactttga

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