Ctenopharyngodon idella (grass carp): 127519915
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Entry
127519915 CDS
T08802
Name
(RefSeq) short transient receptor potential channel 5a isoform X1
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cide01009
]
127519915
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cide04040
]
127519915
Protein phosphatases and associated proteins [BR:
cide01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127519915
Ion channels [BR:
cide04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
127519915
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
PKD_channel
Ank_3
Ank_4
Ank_5
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
127519915
NCBI-ProteinID:
XP_051763519
LinkDB
All DBs
Position
1:complement(12992694..13073139)
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AA seq
1051 aa
AA seq
DB search
MNPLSHLYYKKSSYSPYRDRIPLQIVRAEVELSLEERSFLLAVEKGDYAGVQHALREAEV
YYNIDVNCVDPLGRSALLIAIENENLEVMELLLDHGVNTGDALLYAIRKEVVGAVELLLS
HRKPSGEKQVPSLMMDAQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRCD
CVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEF
RQEYEELSQQCKLFAKDLLDQARSSRELETILNHRDDQSEELDPRECRDLAKLKLAIKYH
QKEFVAQPNCQQLLATLWYDGFPGWRRRHWAVKLVMCFIIGLLFPVFSLIYLLAPKSTLG
LFIKKPFIKFICHTASYLTFLFLLLLASQHIARTNLHMQGPPPTVVEWMILPWVLGFIWA
EIKEMWDGGFNEYVHDWWNLMDFAMNSLYLATISLKIVAYVKHLIYSRNYANQYNSSRPR
EEWEMWHPTLIAEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCL
VLLAFANGLNQLYFYYETEAADEPNHCKGIRCEKQNNAFSTLFETLQSLFWSIFGLLNLY
VTNVKARHEFTEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKL
WMSYFDEGGTLPPPFNVVPSPKSFWYLCLWVHGRLCGSETAPPEEEPHKHENLKEFTEKH
ADRLIQNQHYQEVIRSLVKRYVASMIRNAKTNEGLTEENFKELKQDISSFRYEVLDLLGN
RKPPRRNYSSSSEATLRDEVSDDGEACYHSDGSSVGAKGVSFKTITPSDPSYGVSALFRS
ISGMEASTAAASSAYREDKPKINGLRKNPSPSSSLSSVAPARPALSRTWRRFSRFSSSKK
NSFRRLGLLFSRMGSHIPQPAGVTAATYTISDGLLHPPGAWQDLGFTRGDGPVTRSETNL
NQVDVATLNEGDSVAMTTNGQRVNGRDVLLTLGPLSPSSSLHCASSFSASSSRLLDSNED
VFQGLVGPCGGQTPDSSRWVTEQDDSVTTQL
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccttgtcacatctatactacaaaaagagcagctactctccgtaccgggaccga
atccctctacagattgtccgggcagaggtagagctctctctagaggagcgttcattcctt
ttggccgtggaaaagggcgactatgcaggggtccagcatgcactacgtgaggcagaggtc
tattacaacattgatgtgaactgtgtggatccactaggccgcagtgcactgctaattgct
attgaaaatgagaaccttgaggtgatggagctacttctggatcacggagtgaacactgga
gacgctctgctgtacgccatccgcaaagaagtcgtaggagccgtggagttactgctgtcc
cacaggaaacccagtggagagaaacaggttccatcattaatgatggatgcccagttttcc
gagttcacacctgacattactcccatcatgctcgccgcccacacaaacaactatgaaatc
atcaaactcctggtccaacgcaaagtcaccatccctcggccgcaccagatccgctgtgac
tgtgtggagtgtgtgtccagctctgaagtggacagcttgcgtcactctcggtcccgtctt
aacatctataaagcactcgccagcccctctctcattgccctctccagcgaggatcccatc
ctaaccgccttcagattgggctgggaactgaaggagctcagtaaagtggagaacgagttt
cgacaagaatacgaggagctttctcaacagtgtaagctctttgctaaagacctgctggac
caggcacgtagctcccgtgagctggagaccatcctcaatcaccgtgatgaccagagcgag
gagctggacccgcgagagtgccgagacttggctaaactcaagctggccattaaatatcac
cagaaagagtttgtggcacagccaaactgtcagcagctcttggccacactatggtatgac
ggctttcctggctggcggcgccgtcactgggcagttaagcttgtcatgtgtttcattatc
ggcctgctcttccctgtcttctcgctgatctacctgctggctccaaaaagcacgctggga
ctcttcatcaaaaaacccttcatcaaatttatctgccacacggcctcctacctcaccttc
ctcttcctcctcctcttggcctcacagcacattgcacgcaccaacctacacatgcagggc
cctccgcccactgtggtggagtggatgatactaccttgggtgctgggcttcatatgggct
gagattaaagagatgtgggatggaggttttaatgagtacgtccatgactggtggaacctg
atggactttgctatgaattctctgtatttggccactatttctttaaagattgttgcttat
gtcaagcacctgatttactcaaggaattatgcaaatcagtataacagttctcgtccacga
gaggaatgggagatgtggcatccgacgctgatcgctgaggctttatttgccattgctaac
atcttcagctcgcttcggctcatctccctcttcacggccaactctcacctgggcccactg
cagatttctctgggccgcatgttgctggacatcctcaagttcctcttcatctactgtcta
gtgctgctggcctttgctaatggactcaaccagctttacttctactacgagacagaggca
gcagacgaacccaaccactgcaaggggatccgctgcgagaaacagaataatgcattctca
acgttatttgagacacttcagtctctgttctggtcgatatttggcctcctgaatctttat
gtaaccaatgtgaaggctcggcacgagttcactgagtttgttggagccaccatgttcggc
acctacaatgtcatctcactggtggttctcctcaacatgctcatcgctatgatgaacaac
tcctaccagctcatcgctgaccatgctgacatcgaatggaagtttgctcggaccaagctg
tggatgagttactttgatgagggagggacactccctccaccattcaatgtagtccccagt
cctaagtctttctggtacctgtgtctatgggtacacgggcggctctgcgggtcggagact
gctccgcctgaagaagaaccccataaacacgagaatctgaaggagtttacggaaaagcat
gctgacaggctgatacagaatcagcattatcaggaggtcatccgtagtctagtgaagagg
tacgtggcgtccatgatccgcaacgctaagacaaacgaagggctgacggaggagaatttt
aaggagctgaaacaggacatttccagctttcgctacgaagttttggatcttctcggcaac
cgaaagccgccccggcggaactattcctccagcagcgaggccacgcttcgagacgaggtc
agcgacgatggcgaggcctgttatcacagtgatgggagcagcgtcggggccaaaggcgtc
tctttcaaaaccatcacgccttcagatccatcctacggagtctctgcccttttccgctcc
atctccggaatggaggcgtcaacagcagcagcatcgtctgcgtacagggaagataaacca
aagatcaatggactgaggaagaatccctcgccctcctcttccctgtcctcagtggctcca
gcaagacctgcactttcacggacttggaggcgtttttcacgcttctctagttccaagaag
aactccttcagacggctcgggctgctgttctcacgcatgggcagccacattccgcagcct
gcaggtgttactgctgcaacctacactatctcagatggattgcttcacccgccgggggct
tggcaggacttgggcttcaccagaggcgacggtccagtcacccgcagcgagaccaacctt
aatcaggtggatgtggccactttaaatgagggcgacagtgttgccatgacaaccaatgga
cagagagttaacgggagggatgttttactgacattaggacctctgtccccatcttcttcc
ctgcactgtgcttccagtttctccgcctccagctcccgcctcctggactcaaatgaggac
gtgttccagggattggtcgggccctgtggcggacaaacgccagactcgtcccgctgggta
acggaacaggacgattctgtgaccacgcagctatag
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