Ctenopharyngodon idella (grass carp): 127521330
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Entry
127521330 CDS
T08802
Symbol
si:ch1073-335m2.2
Name
(RefSeq) msx2-interacting protein
KO
K25100
Msx2-interacting protein
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
127521330 (si:ch1073-335m2.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cide03036
]
127521330 (si:ch1073-335m2.2)
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
127521330 (si:ch1073-335m2.2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
SPOC
RRM_5
Cadherin_5
Motif
Other DBs
NCBI-GeneID:
127521330
NCBI-ProteinID:
XP_051766490
LinkDB
All DBs
Position
10
Genome browser
AA seq
2985 aa
AA seq
DB search
MFASGVSSSPAASALSGGFDASESHFESRIRDPFTLSSSARRDPYRDDRGRRADRTYHHH
RRSRSSHSSQSRHPSPQRSTGQTPKAAHSPKRAPVSPSRGPRSRSRSPSSSSDSVSSTSS
TGSGSSDSNSSSSEGSRARSVQSTATHAPPAPPVLALDSDEPRRSFGIRVQNLPTRSTDT
SLKDGLFHEFKKYGKVTSVQIHGASEERYGLVFFRQQEDQEKALSVSKGKLFFGMLIEVT
AWNGPETESENEFRPLDGRIDEFHPKATRTLFIGNLEKTTNYQQLLDVFQRFGEIVDIDI
KRVNGIPQYAFVQYSDIASVCKAIKKMDGEYLGTNRLKLGFGKSMPTACVWLDGLTSNIT
EQYLTRHFCRYGPVVKVVFDRLKGMALILYNNTDFAQAAVRETKGWKIGGNKIKVDFASQ
ESQMAFYRSMQASGQDIRDFYDIPSERREERRTPYHEFSAERAYYENVRTPGIYAEDPRR
DYPGRSRDRYAELDHYQGEHYDPRYHEDPREYRDYRDPFEDIRKYSYIQRERERERERFE
ADRGRWSPSHQRRPLTPSASPSPSDRVSREAERRVYRHSSERSGSCSSLSPPPPQFEKSE
KSPVDYKSEGLEREMEQTEAERTSGAESKKRGRRKEKADREKGEKAKQRRGKAQSPSVPQ
SEADREASLDLSSGKVKVSDLESQEKQKHKGDKEPSPADHVTRLEAQKGERLDQCKSESL
DRDGKGKSKKHLKSDSGSDGKDSLLDSDRLAARKRRFGDPSGKTIRQKRGRLEDDPVSAI
SQPADFAMNMGFAKETDIDVKAEKEAQKREHSKSRIGSHYSQREELDSTTRGTSQGPLLR
PGELSEVDVLDSKSHPVPRRFSNDGTSDKDSKVRDEYLENIDLSQSYRKQMEQNRRLRQQ
LQTPDKPGKTETHQGIDAEDLEHRSLVHEVGKPPQDVTDTSPPSKIKKQESFEMEMSAKR
ERIYRTVRQKSEDPEWNNTNSPRFQHAPLQREEEYADPRIQMTVREVKELSKPEDNVPLD
LELASKRMHTSQMSKMSTSLQDEQQRRWESQLKQDLLPDFSRTSEKRRLNRKYLDYGLWP
DLEPGEVRSDSEEDRENKPNSPAPSTSVSFSERHRPDRLSESKLTSSLERNKFRSFADDQ
TITPDTKALLERAKSLSSSREDNWSFLDYDSHFASFRSRKDTEKVESAPRPTPSWYMKKK
KIRSESEDKVDDRKEDPKPEEQERRELFASRFLHSSIFEQDSRRLQHLEQKHEDPEHGIG
YLYSQQGPAEGQPDPEPVVLFHSRFLELTRLQQQKNKEQIPQNSKHEETIDATRVSKTPE
EEQAPQQQNATEPSIHQAEIKSISPVQAPQTSPVQAPQISPPALAAKESLPSAETECVDT
PTYNLLDPSMKEEDKEHELPSAQPLKPLLEEPSEPNCSSECQESKIPVEEMVLKTNDFES
APETNKDVAELLSSNETPVSNSQPETEPPAKFPESQSPLSHIPSEQHEKEPEPPVTEAES
NSTDDQKVADNYPIEEAVSPPPKSRNKKAKTSPTTPVTTPLPATPDKQSTRKSERIDKEK
LKRSSSPRGVASKAVPDSKSVSKSPGHSTEMEQGTEQNVPSRARRRNVRSVYAKPFEDEN
ALQPGKDAESPRVARKRGVDKDVGPDVETVIAAPLKRGRPPKNRRQAEDVPAGKTERSKS
TESKELDASEMNSEGVPKVGKGKFSPHTQKGVSPVNISASGNGKKGDKMEKISESSKLIT
EENSLVLKNLTIRLDVTEVKAMLQTSEDEPGTDDSPKKSSPGVSSKDAVLEAKFENDAMD
EVNNSERETLPSSTKAIEPDVASLSRELELEQAVENIAKLTEDASPPPPPFKSNLTKAQR
SLAEEPERDSEEEKPANPSSETELAAAIDSITSEDTSCTLPQEQIINSAVDSDADMQTLG
PSSKVSETCVSTAVEETITTPRKGFKGRAKASKKGKGQKGAGSKKEPFKDVVLDAENIPV
KSPESIPTELPTVTERSPTSTAVVITSSSKQGVTLTAPNADIPNEPELPLKTEMDIPKSS
PALSRSPTSSKYQPYSYKNTSPSMSPTRTCLKNLSSYPSRISVSPTERFNQPKEAGVLSP
PQTSVESPTLPSDTPVHDANSGDLRKILTKPRTGPMLDIGATSGNIHPHSVRESDIPPDV
VTSKSAHQDNRQPSVSAQPVVRQPASIPSPETKQIFSEKSVISVIASTPTSVISRVCNPP
DSEDKPNAPIGNPFLDKQPPKQIYQPSLEESSTYHGPPVGEEGGNAGRYIVESTSLSTGS
STGLRVQTSEGVVVLSHSGQKMEGPHRISAKISQIPPASAVDIESQQLVSMPQIKQELYS
ASQPPSSKCSLPSDHGHSMKPQLNVSTIKQESALDKLESSYTSVQSGVVKILQQTPGPSQ
VMSYHHTVMKHPKKGEGSESLSVDGVKPAWVPTISPAISPHLPPAASNHVGFIAGTSTDR
TPSLIQPKQEPRSPRKSGHPHSPFAKVSSPIGSSSPKGVSMVLPPGLPPLSPYVSTVHHS
EQSVIMPPHNAHGGIGRMSPHRVGPIGHLTQGEVRVNTPPLSMMNYAIHSETLTSSWPPG
QQRPTSPQAVGNREMVLKVNTANARSHDGGEEEARRFHTALGRPPAAQLKPESIPAEYRG
ALPSGLPIERFNMSPRDMRVLIHHQQSDRPTAELHQVHVSENIPPSSTPTSMAASLSPRP
HLLAKGVSEKDPSKTSELRRAQTPPSKEGMMAIRSAMPPMASPQRVQLMTTGAGTSFPEY
SAMYTNLRPAHAQFADNSPMGINQSTHSIPPSQGAQEPESSQPQAEAKVELVGHQPVNMV
QLLTKYPIVWQGLLALKNDTAAVQLHFLCGNKALGLRSLPLPESGGILRIVQRMRLEAQQ
LEGVARRMTGESDFCLLLAMPCGVNQDDVLNQTQALKSAFINYLQAKLAAGIINVPNPGS
NQPAYVLQIFPPCEFSESHLSRLAPDLLSQISSISPHLMIVITSV
NT seq
8958 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcctccggagtcagctccagcccggccgctagtgctcttagcggtggcttcgat
gcgtcggagtctcactttgagtctcggattcgtgacccttttaccctttccagttccgct
cgccgcgacccgtaccgggacgacaggggccggcgcgcggaccggacgtaccaccatcat
cggcggagccggtcctcgcactcttcccagtcccggcacccgtcgccccagaggagcacg
ggacagacccctaaagccgcccactcgcccaaaagagcgcccgtgtctcccagccggggc
ccgcgctcgcgctcacgcagcccgtcttcaagctcggactcggtcagcagcaccagcagc
actggcagcggcagcagtgattcgaacagcagctccagtgaagggtcgcgagcgcgctca
gtgcagtctacggccactcacgctcctccggctcctcctgtgctcgcgctggactccgac
gagccacggaggagcttcggcatcagagtccagaacctcccgacacgatccacagatacg
agtttgaaagacgggctctttcacgagtttaagaagtatgggaaggtgacatcggttcag
atccacggggcgtcggaagagcgctacggtttggtgttcttccgacagcaggaagaccag
gagaaagccctcagcgtgtccaaaggaaagctcttcttcgggatgctgatcgaggtcacg
gcctggaacgggcccgagacggagagcgagaacgagtttcgtcccctggacggacgcatc
gacgagtttcaccccaaggccactcgtacgctgtttatcggaaacctggagaagaccacc
aactatcagcagctactcgacgtcttccagcgcttcggggagatcgtggatattgatatc
aagagggtgaatggcattccccagtatgcatttgttcaatactctgatattgcaagtgtt
tgtaaagccattaagaaaatggatggagagtatctcggcaccaacagactgaagcttggg
tttgggaagagtatgccgacagcatgcgtgtggttggacgggctgacctcgaatatcaca
gagcagtacctcacacgacacttctgtcgctacggacccgtcgtcaaggttgtgtttgat
aggttaaaaggaatggctcttattctgtacaacaacactgattttgcccaagcagctgtt
agagaaaccaaaggatggaagataggagggaacaaaattaaggttgattttgccagtcag
gagagtcaaatggctttctatcgatctatgcaggcgtcagggcaggacatccgtgacttt
tatgatattccatcagagaggagggaagagcggcgaactccttatcatgagttttcagct
gagcgggcatattacgagaatgtgaggactcctggcatttatgccgaagacccccgtcga
gattatcctggtcgcagtcgcgatcgctatgcagagttggatcattaccaaggagaacat
tacgatccccgctatcatgaggacccacgggaatacagagactatcgagacccttttgag
gacatcaggaagtacagctatatccagcgtgaacgagaacgggagcgggagcgatttgag
gccgatcgaggcagatggagcccgtctcatcagcgtcgtcccttaactccctctgcttca
ccctcaccttctgatcgtgtctcacgagaagctgaaagacgcgtgtacagacactcctct
gagagatctggaagctgcagctcactgtctccacctccacctcagtttgagaagtctgag
aaatcgccagtagattacaaatcagaaggactggagagagaaatggagcagaccgaggca
gagcgtacaagtggagcggagagcaagaagcgtggcagacgcaaggaaaaggctgacaga
gagaagggagagaaagcaaagcaaaggagaggtaaagcgcagtctcccagtgtacctcaa
tctgaagcagatagagaggctagtctggatttgagttctgggaaagtaaaagtttcagat
ttggagagtcaagaaaagcagaagcataaaggggacaaagaaccttcccctgctgaccac
gtaactcgcctcgaggctcaaaagggagagcgactcgatcagtgcaaaagtgagtcgtta
gacagggatggcaaaggaaagtcaaagaaacatttaaaatctgactctggtagtgacggc
aaagattcccttttagattctgacagacttgctgcgagaaagaggcggtttggtgatccc
agtgggaaaactataagacagaaaagaggccgtctagaggatgatccagtgtctgcgatt
agccaacctgcagactttgcaatgaacatgggatttgcaaaagagaccgatattgatgtg
aaagcagagaaagaggctcaaaaaagagaacactccaaatccaggattggttctcattat
agtcaaagggaagagctggatagcactacgagagggacgtctcaaggcccactgctacga
ccaggtgaattatctgaggtggatgttttggactcaaaatcgcaccctgtgcctaggcga
ttttcaaacgacggaacctcagataaggacagcaaagtaagggatgaatatctagaaaat
attgacctttctcagagttaccgcaaacagatggagcaaaaccgacggctacggcagcag
ctgcagacgcctgataaaccaggaaagacagaaactcatcaaggtatagatgcagaggat
cttgagcatcgtagcctggtgcatgaggttggcaagcctccacaggatgtaactgatacc
tcgcctccaagtaagatcaagaaacaagagtcctttgagatggaaatgagtgctaagagg
gaaaggatttaccgaacagttcggcaaaagagtgaagacccggagtggaataacacaaac
tctccaaggtttcagcatgccccgctacaaagagaggaagaatatgcagatccccgtatt
caaatgactgtgagagaagtaaaagaactctcaaaacctgaagataatgttccattagat
ctggaacttgccagtaaacggatgcacacctcacagatgtcaaagatgagtacatcgcta
caagacgagcagcaaagacgatgggagagtcaactaaagcaagatttgttaccagacttt
tcaaggacctctgagaaaagacgtctcaatcggaagtatttggattatggactttggcct
gatttggaacctggtgaagtccgttctgactcggaagaggatcgtgaaaataagcccaac
tctcctgcgccatcaacttctgtatctttctctgaaaggcatcgtccagacaggttgtca
gagtccaagctaacatcctctctagagagaaacaaattccgttcttttgcagatgatcag
acaatcacaccggatactaaagctttgttagagcgtgcaaagtctttgtcctcctcaagg
gaagacaactggtctttccttgattacgattcacattttgccagtttcagaagtagaaag
gacacagaaaaggtagagtcagcaccacgaccaactccctcgtggtatatgaagaagaaa
aaaattcgaagtgagtctgaagacaaagtggatgacaggaaagaagatccaaagccagaa
gaacaggagagacgagagttgtttgcatcacgttttttgcacagttctatttttgagcag
gattcaaggcgtctccagcatctggagcaaaagcatgaggaccctgaacatggtattgga
tatctgtactctcagcaaggcccagcggaagggcagcctgacccagaaccagttgtgctt
ttccatagccgcttcttggagctaacaaggttgcagcaacagaagaataaagaacaaatc
cctcaaaattccaagcatgaagaaaccatagatgcaaccagagtaagcaaaacaccagaa
gaagaacaagctccacagcaacaaaatgctactgaacctagtatccatcaagctgagatc
aaatcaattagccctgttcaggctcctcagactagtcctgtccaagctcctcaaatatca
ccgcctgctttagcagccaaagaatccttgccatcagcagaaacagaatgtgttgatact
cctacctataatttgcttgatccttccatgaaggaggaagataaagagcatgaactgccc
tcagctcagccattaaagcctttactcgaggaaccctcagaacccaattgttcttcggaa
tgccaagagtcaaagataccagtcgaggagatggtactgaagactaatgactttgaaagt
gctcctgaaaccaacaaagatgttgcagaactgctctcaagcaatgaaacaccagtcagc
aattcgcaaccagagactgagcctccagcgaagtttcctgaatcccaaagtcccctctca
catatcccttctgagcaacatgaaaaggaacctgagccacctgttacagaggctgaatct
aacagtacagatgatcagaaagttgctgataattatccaattgaagaagctgtgtctccc
cctccaaagtcaagaaataaaaaggctaaaacctcacctaccacaccagtaactacacct
ctgcctgctaccccagacaaacagagtacccgcaaaagtgagcgcattgacaaagaaaaa
ctgaaacgctcatcttctccaagaggagtggcatccaaggcagtacctgattcaaagtca
gtaagtaagtcccctggacacagcacagaaatggagcaaggtacagagcaaaatgtacca
tctagggcaagacgtaggaatgtgcgttctgtttatgctaaaccatttgaagatgaaaat
gctctgcaacctggaaaagatgccgaatcacctcgtgttgcgcggaagcgtggcgtagat
aaagatgtgggtcctgatgtagaaactgttattgcagcgcccttgaaacggggacgcccc
cccaagaatcgacgccaagcagaggatgtaccagcaggaaaaactgaacggtcaaaatca
actgagtccaaagaattggatgcaagtgagatgaacagtgagggggttcccaaagtaggt
aaaggcaaattttcaccccacacacaaaaaggagtaagtccagtgaatatatctgcatct
ggaaatggaaaaaagggagacaaaatggagaaaatatcagaaagttcgaaactcattact
gaagaaaactctcttgttcttaaaaaccttacaattcggcttgacgtgacagaggtaaag
gcaatgcttcagactagtgaagatgaacctggaactgatgattctcccaaaaagagctca
cctggtgtgtcttcaaaggatgcggtactagaagctaaatttgaaaatgatgccatggat
gaagttaataatagtgaaagagaaacattgccttcttcaacaaaagctattgagccagat
gtagcttcgctgtctcgagagctggagcttgagcaagctgttgagaatattgcaaagctg
acagaagatgcatctcctcctcctcctccattcaaaagtaacttgacaaaggcacaacgt
tcattagctgaagaaccagagcgtgactcagaagaagaaaagcctgcaaatccatccagt
gaaacagagcttgctgctgctatagattccattacatcagaggacacatcttgtaccctg
cctcaagaacaaataatcaattctgctgtagattcggatgctgatatgcagacacttgga
cccagttcaaaagtatctgaaacctgtgttagcacagcagttgaggagaccataaccact
cctagaaaagggtttaaaggcagagcaaaagcttcaaagaagggcaaaggccaaaagggt
gctggaagcaaaaaggaacccttcaaagatgtagttttggatgctgaaaacatccctgtg
aagtcaccagaatccatacccaccgaacttccaacagtcacagaaagatcacccacaagt
acggctgttgtcattacttcctcttccaagcagggtgtaactttaacagcgcctaatgca
gacattccaaatgaacctgagttgcctcttaaaactgagatggatatcccaaaatcttct
cctgctctcagcagaagcccaacgtcatccaagtatcagccttattcatacaaaaacaca
tccccctcaatgtctccaacaagaacttgcctcaagaatttgtcctcatacccaagcagg
atttctgtttccccaacagagcgcttcaatcagccaaaagaagctggggtcctctcccct
ccacagacctctgtagagagcccgacattaccctcagatacccctgttcatgatgccaac
tcaggtgatttgcgtaaaatccttacaaagcctagaactggcccaatgttggacattggt
gctacatctgggaacattcatcctcattctgtaagggaaagtgacattccaccagatgtg
gtaaccagcaaaagtgctcatcaagataacaggcaaccctccgtttcagcccaacctgta
gttcgacaacctgcttctataccatccccagaaacaaagcagatcttcagtgagaagtcc
gttatttcagttattgcttccactcctacctctgtcatcagtcgagtttgcaatccccct
gactcagaggataagccaaatgctcccattggaaatccctttctcgacaaacaacctcca
aaacagatttaccagccaagcttggaggaaagcagtacttaccatggtccaccagtcggt
gaggaaggtggaaatgctggtcgttatattgtggagagtacatcgctgagtacaggttcc
agcacaggactgagagttcagacatcagaaggtgtggtggtgctaagtcattctggccag
aaaatggaggggccacatcgcataagtgccaaaatcagccagatcccacctgccagtgct
gtggacatagagtcacagcagttggtgtccatgccccagatcaagcaggaactttacagt
gcctcccagccaccatcttcgaaatgttcacttccttcagatcatgggcattcaatgaaa
ccacaactaaatgtctccacaattaaacaagagtctgcactggacaaattagaatcctct
tacacttcagttcaaagtggagttgttaaaatattgcaacaaacgcctggcccgtcacag
gtcatgagttaccatcatacagtgatgaagcaccccaagaagggagaagggtcagagtcc
ctaagcgtggatggcgtgaaacctgcctgggtcccaactattagtcctgctataagtcca
catcttcccccagcagcaagcaatcatgttgggttcatagctggcacatcgacagatcga
actccgtcacttattcaacctaagcaggagccgcgatctccccggaaatctggacacccc
cattctccttttgccaaagtgtcgtctcctataggctcttcatctccgaaaggtgtgtct
atggtccttccccctggattacctcctctgtccccatatgtttccactgtccaccactct
gagcagtctgtgatcatgcccccacacaatgctcacggtggtattggaagaatgtcaccg
caccgcgttggcccaataggacacctcactcagggtgaggtaagagtgaacactccacct
ctctctatgatgaactatgccattcactctgaaaccctcacttcctcttggccacctggc
cagcagcgacccacatctccccaggccgtggggaacagggaaatggttctcaaagttaac
acagccaatgcaagaagccatgatgggggggaagaagaggcaaggcgtttccatacagct
cttggaagaccaccagcagctcaattgaaaccagaatccataccagcagaatatcgtgga
gctctccccagtggtttaccaatcgaacgattcaacatgtcaccaagagacatgcgagta
ctcattcaccaccagcagagcgatcgtcccactgcagaattacaccaggtgcatgtctct
gagaacataccaccctcttcaactcctaccagcatggcagcatctctttcccctcggcca
cacttgttagcaaagggagtatctgagaaggacccctcgaaaacatcagagcttaggagg
gcacagacacctcccagtaaagagggaatgatggcaatccgtagtgcaatgcctcccatg
gcttctcctcagagagttcaactgatgacaacaggagctgggacgtccttccctgaatat
tcagccatgtatacaaacctacggcccgcccatgctcagtttgctgataattctccaatg
ggtattaaccagtcaacccatagcatcccaccatcacagggagctcaagagccagagtca
agtcagccacaagctgaagctaaagtggagttggttggacatcagccggtgaacatggtg
cagcttctgacgaaataccctattgtgtggcaaggcctactggcactgaagaatgataca
gcagcggttcagctgcatttcttatgtggaaacaaagctcttgggctgcggtctttgcct
ctcccggagagtggaggcattcttcgcatcgtacagagaatgaggctggaggcgcagcag
ttggagggagtcgctcgcagaatgacgggggagagtgacttctgcctgctgttggccatg
ccgtgtggcgtcaaccaggacgacgtgttgaaccaaacgcaggcgctcaaatctgccttc
atcaattacctgcaggccaaactggcggctggaatcatcaacgtccccaatcccggctcc
aatcagcctgcctatgtgctgcagatctttccaccgtgcgagttttccgagagccacctg
tcgcgacttgctccggacctcctcagccagatctccagcatctctccgcacctcatgatt
gtcatcacctctgtgtga
DBGET
integrated database retrieval system
