Citrobacter sp. CRE-46: AN232_11635
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Entry
AN232_11635 CDS
T05520
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cie
Citrobacter sp. CRE-46
Pathway
cie03030
DNA replication
cie03410
Base excision repair
cie03420
Nucleotide excision repair
cie03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AN232_11635 (ligA)
03410 Base excision repair
AN232_11635 (ligA)
03420 Nucleotide excision repair
AN232_11635 (ligA)
03430 Mismatch repair
AN232_11635 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cie03032
]
AN232_11635 (ligA)
03400 DNA repair and recombination proteins [BR:
cie03400
]
AN232_11635 (ligA)
Enzymes [BR:
cie01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AN232_11635 (ligA)
DNA replication proteins [BR:
cie03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AN232_11635 (ligA)
DNA repair and recombination proteins [BR:
cie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AN232_11635 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AN232_11635 (ligA)
MMR (mismatch excision repair)
DNA ligase
AN232_11635 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AN232_11635 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AWS95817
UniProt:
A0A2Z3X7F6
LinkDB
All DBs
Position
2381649..2383664
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPDLVTPDSPTQ
RVGAAPLSAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDKLTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPTRLEVRGEVFLPQAG
FEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGALPDTHL
GRLLQFKEWGLPVSDRVALCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSMALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIDRLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVFPQHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRALDVAGMGDKIIDQLVEKEYVHTPADLFTLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALEA
ASVEELQKVPDVGIVVATHVFNFFAEESNREVIGQLLAQGIRWPAPMVINAEEIDSPFAG
KTVVLTGSLSLMSRDDAKARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVI
DEAEMIRLLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaaccacgcttcgccatcatgagtat
ctctaccatgtgatggacgcgccggaaattcccgatgcggaatatgatcgcctgatgcga
gaactgcgcgagctggaagcgcagcatccggaccttgttacccccgactcgccaacccaa
cgcgttggcgccgcgccgttgtcggcgttcagccagattcgccatgaagtgccgatgcta
tcgctggataacgtgtttgatgaggagagttttctcgccttcaacaagcgcgtgcaggac
cgactgaagagcaccgataagctgacctggtgctgtgaactgaaactggacggcctggcg
gtcagtatcctgtatgaaaacggcgtgctggtcagcgccgcaacgcgcggtgatggcacc
acgggggaggatattacctctaacgtgcgcactatccgcgcgatcccgttaaaactgcat
ggcgataatattcccacgcgtctggaagtgcgcggggaagtgttcctgccacaggccgga
tttgaaaaaattaatgaagaagcccgccgcaccggcaataaagtatttgctaatccgcgc
aacgccgccgccgggtcattacgccagcttgatccccgtatcacggcgaagcgaccgctt
actttcttctgctatggcgttggtgtgctggaaggcggcgcgctgcctgatactcacctc
ggccgtttgctgcaatttaaagagtggggactgccggtaagcgacagggtagcgctgtgt
gactcgccggaggaagtactcgcttactatcataaggttgaagaagaccgaccgacgttg
ggcttcgatatcgacggcgtggtgattaaagtcaactctatggcgttgcaggagcaactg
ggctttgtcgctcgcgcgccgcgctgggcggtggcctttaagtttccggcgcaggagcag
atgacctttgttcgcgatgttgagtttcaggtcggacgtaccggggcgattacgcccgtt
gctcgccttgaaccggttcaggttgccggggttctggtcagtaacgccactctgcataat
gccgatgaaatcgatcgtctggggttgcgtattggcgataaagtcgttattcgccgggcg
ggcgatgtaatcccgcaggtggtcaacgtggtgctttccgagcgtccggaagagacgcgt
gaaatcgtgtttccacagcactgtccggtgtgtgggtctgatgttgaacgtgtggaaggc
gaagcggtcgctcgctgtaccggcggcctgatttgcggcgcccagcgtaaggaatcgttg
aaacactttgtttcccgccgcgcgctcgatgttgccggtatgggcgacaaaattatcgat
caactggtggagaaagagtatgtccatacgccagcagatctcttcaccctgacggcaggc
aagctcaccggactcgatcgaatggggccaaagtcggcgcaaaacgtggtgaatgcgctg
gaaaaagcgaaagaaacgacgtttgcccgtttcctctacgcgctgggcattcgtgaagtc
ggcgaggccactgccgcaggtctggcggcgtatttcggcactctggatgcgctggaagcg
gcctctgttgaagagctgcaaaaagtgccggatgttggcattgtggtggcgacgcacgtg
tttaatttctttgccgaagagagcaaccgcgaggtgataggccagttgctggcgcagggc
attcgctggcccgcgccgatggttatcaacgctgaggaaatcgacagcccgtttgctggc
aaaacggtggtgctgaccggaagcctgagcctaatgtcgcgtgatgacgccaaagcacga
ttaaccgaactgggcgcaaaagtggccggtagcgtgtcgaagaaaaccgatctggtgatt
gccggcgaagcggcgggttcgaaactggcaaaagcgcaggaactgggtattaccgtgatt
gatgaagctgaaatgatccgcttactgggtgcctga
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