Citrobacter sp. FDAARGOS_156: AL515_16600
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Entry
AL515_16600 CDS
T04313
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cif
Citrobacter sp. FDAARGOS_156
Pathway
cif03030
DNA replication
cif03410
Base excision repair
cif03420
Nucleotide excision repair
cif03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AL515_16600 (ligA)
03410 Base excision repair
AL515_16600 (ligA)
03420 Nucleotide excision repair
AL515_16600 (ligA)
03430 Mismatch repair
AL515_16600 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cif03032
]
AL515_16600 (ligA)
03400 DNA repair and recombination proteins [BR:
cif03400
]
AL515_16600 (ligA)
Enzymes [BR:
cif01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AL515_16600 (ligA)
DNA replication proteins [BR:
cif03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AL515_16600 (ligA)
DNA repair and recombination proteins [BR:
cif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AL515_16600 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AL515_16600 (ligA)
MMR (mismatch excision repair)
DNA ligase
AL515_16600 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AL515_16600 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
Prok-E2_C
Motif
Other DBs
NCBI-ProteinID:
AMH15378
LinkDB
All DBs
Position
complement(3530422..3532437)
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLLRELRELEAQHPDLITPDSPTQ
RVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDKLTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLQFKAWGLPVSNRVTLCDSPEEVLAYYHKVEEDRPTLGFDIDGVVVKVNSMALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREIEFPTHCPVCNSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFTLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALEA
ASVEELQKVPDVGIVVATHVFNFFAEESNREVIVQLLEQGIHWPAPVVINAEEIDSPFAG
KTIVLTGSLSLMSRDDAKARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEAEMIRLLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaaccacgcttcgccatcatgagtat
ctctaccatgtgatggacgcgccggaaattcccgatgcggaatacgatcgtctgctgcgc
gaactccgcgagctggaagcgcagcatccggaccttattacccctgactcgccaacccaa
cgcgttggcgccgccccgttaacggcgttcagtcagattcgccatgaagtgccgatgctg
tcgctggataacgtgtttgatgaagagagttttctcgcctttaacaagcgcgtacaggac
cgactgaagagtacggacaaactaacctggtgctgtgagctgaagcttgacggactggcg
gtgagtattctctatgaaaacggcgtgctggttagcgccgcaacgcgcggcgatggcacc
accggggaagacattacctcgaacgtgcgcaccatccgcgcgatcccgttaaaactgcgt
ggcgataatattccggctcgcctggaagtgcgcggcgaagtgtttttgccgcaggccggg
tttgaaaaaatcaacgaagaagcccgccgcactggcaacaaagtgtttgctaacccgcgt
aatgcggcggctgggtcactgcgtcagctcgatccgcgtattacagcgaagcgaccgctt
actttcttctgctatggcgtcggcgtgctggaaggcggcgaactgcccgatacccatctg
ggtcgcctgctgcagtttaaagcgtggggcctcccggtcagcaacagggtaacgttgtgc
gactctccggaggaagtactcgcttactatcataaggttgaagaagaccggccaacgctt
ggattcgatattgacggcgtggttgtcaaagttaactccatggcgctgcaggagcaactg
ggctttgttgcccgcgcaccgcgctgggcggtagcttttaagttcccggcgcaggaacag
atgacttttgttcgcgacgttgagtttcaggtcggtcgtaccggcgcgattacgcctgtc
gcccgcctcgagccagtgcaggtggctggtgtgctggtgagtaacgcaacgctgcataac
gctgacgaaatcgagcggctgggtttgcgtattggcgacaaagttgttattcgccgtgcg
ggcgatgtcatcccgcaggtggtgaacgtcgtactctccgaacgcccggaagatacgcgc
gaaatcgagtttcccacccactgtccggtatgcaactctgacgttgagcgtgtggaaggc
gaagccgttactcgctgcactggcggtttaatctgtggtgcgcaacgtaaagagtcactc
aaacacttcgtttcccgtcgtgctctggatgttgacggtatgggcgacaaaattatcgat
caactggtcgagaaagagtacgtgcacacaccagcggatctgttcacgctgaccgccggt
aagctgaccggcctcgatcgtatggggccgaagtcggcgcaaaacgtagtgaatgcgctg
gaaaaagcgaaagagaccacgtttgcccgtttcctctatgcgctgggcattcgagaagtc
ggcgaagccacggctgcaggtctggctgcatatttcggcacgctcgacgcgctggaagcc
gcctctgttgaagagctgcaaaaagtgccggatgtcggcatcgtggtggcgacccacgtg
tttaatttctttgccgaagagagtaaccgcgaagtgatcgtccagcttttggagcagggg
attcactggccagcgccggtggttatcaacgctgaagaaatcgacagcccgtttgccggt
aaaacgattgtgctgaccggtagcctgagcctgatgtcacgcgatgacgccaaagcgcgt
ctgaccgagctgggggcaaaagtggccggtagcgtgtcgaagaaaaccgatctggtgatt
gcgggggaagcggcgggctctaaactggcaaaagcgcaggagttgggcattgccgttatc
gacgaagctgaaatgatccgcttgctgggtgcctga
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integrated database retrieval system
