Chryseobacterium sp. IHB B 17019: ATE47_02425
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Entry
ATE47_02425 CDS
T04193
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cih
Chryseobacterium sp. IHB B 17019
Pathway
cih03030
DNA replication
cih03410
Base excision repair
cih03420
Nucleotide excision repair
cih03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ATE47_02425
03410 Base excision repair
ATE47_02425
03420 Nucleotide excision repair
ATE47_02425
03430 Mismatch repair
ATE47_02425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cih03032
]
ATE47_02425
03400 DNA repair and recombination proteins [BR:
cih03400
]
ATE47_02425
Enzymes [BR:
cih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ATE47_02425
DNA replication proteins [BR:
cih03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ATE47_02425
DNA repair and recombination proteins [BR:
cih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ATE47_02425
NER (nucleotide excision repair)
GGR (global genome repair) factors
ATE47_02425
MMR (mismatch excision repair)
DNA ligase
ATE47_02425
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ATE47_02425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DUF7575
UPF0758_N
RNA_ligase
Dna2
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ALR29457
LinkDB
All DBs
Position
complement(517293..519299)
Genome browser
AA seq
668 aa
AA seq
DB search
MPENIQQKIEQLRQELHQHNENYYQLDTPTISDYDFDMLLEELRDLEAKYPEFYDENSPT
VRVGGGITKVFPTVQHKFRMYSLDNSYDFDDLEDWEKRIIKTIAEPVEFVAELKYDGASI
SILYENGKLAQAVTRGDGFQGDEITSNVRTISDIPLKLKGDFPEHFFMRGEIYLTRKNFD
KINQLREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSSVLYQYISEEIPAETHWELLE
KAKSWGFKTSQQAKLCTTLDEVKEFINFWDIERHNLPFEIDGIVLKVNSLKQQRQLGYTA
KSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDII
KKLDLHEHDFVYVEKGGEIIPKIVGVNTEKRTEKSKEIEYIKHCPECGTELVKIVDQAIH
FCPNDLHCPPQVVGRMIHYVSRKALNIENLGSETIEQLYRERLIENPADFYALTKEQLLP
LERMAEKSAQNIISGIEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFTTIEELKNATVE
ELCQVEDIGTKIAVSIVDFFNNPENILMLERLKSYGVQLEKGESTNEVLSNVLEGKTFLF
TGKLSLFTREAAEEMVEKHGGKNISAVSKNLNFLVVGEKAGSKLKKAQDIGTIEILDEQQ
FLDLIEKQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaaatattcaacaaaagatagaacagcttcgccaggagcttcatcagcacaat
gaaaattattaccagctggacacacccaccatttcagattatgattttgacatgctgttg
gaagaacttcgtgacctggaggcaaaatatccggaattttatgatgaaaactcaccaacg
gtacgtgtcggaggaggaattacaaaggttttcccgacagttcagcacaaattcaggatg
tattctctggataattcctacgattttgatgatcttgaagattgggaaaaaagaattatt
aaaaccatcgcggaacccgtagaatttgttgcggagctaaaatatgatggagcttccatt
tccattctttatgaaaacggaaagctggcacaggccgtaacccgtggagacggttttcag
ggggacgaaattacatcaaatgtaagaaccatttcagatattcctttaaaattgaaaggc
gattttccggaacatttttttatgcgtggcgagatttatttaacccgaaaaaatttcgac
aaaatcaatcaactgcgtgaggaagaaggcttagatccattcatgaatccaagaaatacc
gcaagcggaagcttgaaaatgcaggacagcggtgaggtaagaaaacgtgggctttcatcg
gtgctgtatcaatatatttcagaggaaattcctgcagaaacgcattgggaattacttgaa
aaggcgaaatcatggggttttaaaacttcgcagcaggcaaaactttgcacgactctggat
gaggtgaaagaatttatcaatttttgggatattgaaagacataatttaccttttgaaatt
gatggaattgtattgaaagtcaattcattaaaacaacaaagacagcttggatataccgca
aaatctccacgctgggcgatggcttacaaatttaaagctgaaaaagttgagaccgaatta
cagagcgtttcttaccaggtcggaagaacgggagcgattactccggttgcgaatctgaag
cctgttttactggccggaaccattgtaaaaagggcttcgctgcataatgaagatattatt
aaaaaactcgatttacacgaacatgatttcgtctatgtagaaaaaggaggtgaaattatt
ccgaaaattgtcggcgtaaacacagaaaaaagaaccgaaaaaagcaaagaaattgaatat
atcaagcattgtcctgaatgcggaaccgagcttgtaaaaattgtagatcaggccatccat
ttttgcccgaatgatcttcactgcccgccgcaggtcgtgggaagaatgatccattatgtt
tccagaaaggctttaaatattgaaaatttaggcagcgaaacgatcgaacagctttacagg
gaacgattgattgaaaatccagcagatttttatgccttaaccaaagaacagcttcttcca
ctggaaagaatggcggaaaaatctgcccagaatatcatctccggaattgaaaaatcaaaa
gaaatcccgtttgaaaaagtgttgtacggaattggtataaagcacgtcggggaaacggtt
gcgaagaaattagttaaaaatttcacaaccattgaagagttgaaaaacgcgactgttgaa
gagctttgccaggtggaagatatcgggacaaaaattgcggtaagtattgttgatttcttc
aataatcctgaaaacattttaatgcttgaaaggttaaaatcttacggcgttcagcttgaa
aaaggcgaaagtacaaatgaagttttatctaacgtcctggaaggaaaaactttcctgttt
accggaaaattgtctttatttacaagagaagcggcagaggaaatggtagaaaaacacggc
ggaaaaaacatttcggcggtttcaaaaaaccttaatttccttgttgtgggtgaaaaagca
ggaagcaaattaaagaaagctcaggatatcggaacgattgagattctggatgagcagcag
tttttagatttgatcgagaaacaataa
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