KEGG   Carya illinoinensis (pecan): 122289068
Entry
122289068         CDS       T08745                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122289068
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cill03021]
    122289068
Enzymes [BR:cill01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     122289068
Transcription machinery [BR:cill03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     122289068
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 122289068
NCBI-ProteinID: XP_042951917
LinkDB
Position
12:27177409..27199381
AA seq 1477 aa
MDHEFSEEQQVPSGHITAIRFSFSTQTDTEKVSVISIDAVSEVTDPKLGLPNPSSQCSTC
GARDLKYCEGHFGVIKFPFTILHPYFLSEVAKILNKICPGCKSVRQELKVKDGDSVRSHR
QSKSCKYCAGNSVEWYPTVKFKVSSTEVFRNCAIIVEINEKLKTKVQNKSFRGLSADFWD
FIPKDEQQEENCLKPNRRVLSHAQVRYLLNDVDPKLIKKFVLRTESLFLNCFPVTPNCHR
VTEVTHAFSNGQRLVFDDRTRAYKKLVDFRGIANELGSRVLDCLKISKLSSEKSPDKFLV
SVQPKKGADPSISSGLRWIKDVVLGKRNDHCFRMVVVGDPHIKLSEIGIPCHIAERLQIS
ESLNRWNFDKLSDCCRLCFIEKGEVYVRRKGSLVRVRRVAELQIGDTIYRPLNDGDILLI
NRPPSIHQHSLIAFSVKVLPVASVLSINPLCCSPFRGDFDGDCLHGYIPQSIDARVELSE
LVALDRQLINGQNGRNLLSLSQDSLTAAHLVMEDGILLNLFQMQQLQMFCPHQLPPPAIV
KAPSLSSFIWTGKQLFSMLLPPGFEYDFPSNGVYVSNGELLSSEGSFWLRDNNSNLFQSL
IKHCQGKVLDFLYAAQEVLCEWLSMRGLSISLSDLYLSSNSSSRKNMMDDIFCGLQEAEQ
TCNFKQLMVDSCRYFLVEGGEENAVVLDVERLCYEKQKSSALSQASVDAFKQVFRDIQNL
VYKYASKDNSFMSMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRIPHQLSCAAWNNQKV
YGSVQKADDSPDHARTYIPYAVVENSFLTGLNPLECFVHSVTSRDSSFSDNADLPGTLNR
RLMFLMRDLYTAYDGTVRNAYGNQLIQFYYSHNKDASTPTSSIDDLFGESVDVHYGIGGQ
PVGSLSASAISEAAYSALDQPISVLETSPLLNLKKVLESGTRKRSANKTMSIYLSEKLGR
QRHGFEYGALEIKNHLERLIFSEIVSTVMIIFSPQTCSKMSFSPWVCHFHICKEIARMRG
LKVHSIINSLQKRYDYFRTESKFKLPNLQIRSKDCSVNDTREDDDIFCINVTIAEVSRNS
ALPLDTVRDLVIPFLLGTVIKGYPEIKKVNILWNDWSKVPRCQHGSSGELYLRVAMSGDS
QKTNLWSLLKNDCLQIMDMIDWSRSHPDSVHDFCLAYGIDAGWKYFLNRLNSAISDTGKS
VLPQHLLLVADSLSATGEFVGLNAKGIAQQREHALVSSPFMQSCFSNPSACFIKAAKAGI
VDDLKGHIDALAWGKVPSTGTGSHFDIMYSGKGYELAQPEDVYNLLGSQIISDEQNVKTK
MPVVHQSISAKCGAQFVFKYSALAPKELKKMESISKSLLRSVLTSNDIHKLSHVLKGILH
KYPINHRLDEKDKSTLMMALYFHPRRDEKIGSGAQDIKDIKVSSHPKYQNTRCFELVRMD
GTVEDFSYHKCVLGALEMIDPRRAKNYKSKWLQHSNV
NT seq 4434 nt   +upstreamnt  +downstreamnt
atggaccatgagttttctgaagagcaacaggtgccatctggtcacatcaccgccataaga
tttagtttttcaactcagacggatacagagaaggtatctgttatatcgattgacgcagtt
agtgaggtcactgatcctaagttgggacttccaaatccatcttctcaatgctccacatgc
ggtgccagagatttaaaatactgtgaaggtcattttggggttatcaagtttcctttcacc
atactccatccttattttttatcggaagttgcaaagattttgaacaaaatttgcccgggg
tgtaaatctgtacggcaagaactaaaggtcaaggatggggattcagttcgtagccatcgt
cagtctaagagttgcaaatattgtgctggaaattcagtagagtggtatccaacggtgaag
tttaaggtttcctctacagaagtgttcagaaattgtgcgattatagtagagataaatgaa
aagttgaaaacgaaggttcagaataaaagtttcaggggtttgtctgctgacttttgggat
tttattccaaaagatgaacagcaagaagaaaattgtttgaaaccaaacagaagggttcta
tcacatgcacaggtccgttatttattgaatgatgttgatccgaagctcataaaaaagttt
gttttgaggaccgaatctctttttctcaactgttttcctgtgacaccaaactgtcatcgt
gttactgaagttacacatgcattttctaatggacagcgactggtatttgatgaccgaacc
agggcctacaagaaactggttgactttagagggattgctaatgagttgggttctcgtgtt
ctagactgcctaaaaatttcaaagttaagctcggagaagtcaccggataaatttttggtt
tctgtccagccaaaaaaaggtgcagatccttccatctcctctgggttgagatggataaaa
gatgttgttcttgggaagcgaaatgatcactgttttcgtatggtggtggttggtgatcca
cacattaagctcagtgaaattggtataccctgtcatattgcggagagattgcaaatttct
gagagtttgaacaggtggaactttgataaattgagtgattgctgtagactgtgtttcatt
gaaaagggagaggtttatgtgcgtagaaaaggtagtctagttcgtgtgcgtcgcgttgcc
gaacttcaaattggggacaccatatacaggcctcttaatgatggggatattttgttaata
aacaggcctccatcgatacatcaacactcccttattgctttttctgttaaagtcctacct
gtagcttcagtgctttcaatcaacccactttgctgctctccttttcgtggggattttgat
ggtgattgccttcatggctatattcctcaatctattgatgccagggttgaacttagtgaa
cttgttgcgttagataggcaattaattaatgggcagaatggtaggaaccttctttcgctt
agtcaagatagtttaactgctgcccatttggtcatggaggatgggatcctcttgaacctc
ttccaaatgcagcagctgcaaatgttctgtccgcatcaacttccaccgcctgctattgtc
aaagctccctcactaagtagttttatttggactggcaagcaattattcagcatgctactg
cctccaggttttgaatatgattttccttcaaatggtgtttatgttagtaatggagagctt
ttatcttctgaaggatctttttggctgcgtgacaacaatagcaacctttttcaaagtctt
atcaagcattgtcagggtaaggtacttgacttcttgtatgctgctcaggaagttctttgt
gagtggttatcaatgcgtggtttgagtatttcactttcagacttgtacctctcctctaac
tcatcctcccggaaaaacatgatggatgacatcttttgtggtttacaagaagcagagcag
acatgtaatttcaaacagttgatggtggattcttgtcggtattttcttgtcgaaggtggt
gaagagaatgctgtggttcttgacgtggaacgtttgtgttatgagaagcaaaaatcttct
gcactcagtcaagcttctgttgatgctttcaagcaagtctttcgggatatacaaaactta
gtctacaaatatgcaagtaaggacaactcctttatgtctatgtttaaggctggaagcaag
ggtaatttgctgaaattggttcagcatagcatgtgtcttggcttgcaacattctctggtt
cctctatcatttaggatcccccaccagctctcatgtgctgcttggaataaccaaaaggta
tacggttcagtccagaaagctgatgatagtcctgaccatgctcggacttacatcccgtat
gctgtagttgaaaattcctttctgacgggcttgaatcctttagagtgttttgttcattca
gtcactagtcgagatagttctttcagtgacaatgcagacctccctgggactttgaaccgt
aggcttatgttcttaatgcgtgatttgtacacagcatacgatggaacagtccgtaacgca
tatgggaatcagcttattcagttctattatagtcataataaggatgcatctactccaact
agcagcatcgatgacttatttggtgagagtgttgatgttcattatgggataggtggccag
cctgtcggttcattgtctgcttctgccatttcagaagctgcatacagtgctttggaccaa
ccaattagtgtgcttgaaacttctccattgctgaatctgaagaaagtactggagtctggg
accagaaaacgtagtgctaacaaaactatgtcaatatatttgtctgagaaacttgggaga
cagcggcatggttttgagtatggagccttagaaataaagaatcatttggagagattaata
ttttcagaaattgtgtctactgtcatgataatcttttccccacagacttgtagcaagatg
tctttcagtccttgggtatgccattttcatatatgcaaggaaattgcgagaatgcgagga
ttaaaagtgcattcaatcatcaattctcttcagaagaggtatgactacttcaggacagaa
tcaaaattcaagcttcccaacttgcaaataagaagcaaagactgttctgtaaatgacaca
cgagaagatgatgatatattttgcatcaatgtcacaatagccgaagtttccaggaattct
gctttaccattggatacagttcgagacttggtcatacctttccttctcggaacagttatt
aaaggttacccagagatcaagaaggtaaatattttatggaatgattggtccaaagtacca
agatgtcagcacggttcttctggtgaactatacttgagggttgctatgtcaggagactct
cagaagacaaatctctggagtttactaaagaatgactgtctacaaataatggatatgatt
gactggtcacgtagtcatccagatagcgttcatgatttttgtttggcctatggaatagat
gctggatggaaatattttctcaataggctgaactctgcaatatccgacactggcaagtct
gttcttcctcagcatttgcttcttgttgctgatagcctatcagccactggagagtttgtt
ggcttgaatgcaaaaggcattgcacagcaaagagaacatgcattagtctcgtcacccttt
atgcagtcttgcttctctaaccctagtgcatgctttattaaagctgctaaggctggcatt
gtggatgatcttaagggtcatattgatgcattggcatggggaaaggttccttctacaggg
actggcagccactttgatattatgtattctgggaaggggtatgagcttgcacagcctgag
gatgtttataacctgctgggtagccaaattatttctgatgagcagaatgtaaagaccaaa
atgcctgttgtacaccaaagcatatctgccaaatgtggcgctcagtttgtcttcaagtat
agcgctcttgcaccgaaagaacttaaaaagatggaaagcatatcgaaatcactcttaaga
agcgttttgacatccaatgatattcataagctatcccatgtgttgaagggtatattgcac
aagtatcctattaatcacaggttagatgaaaaggacaagtcaactttgatgatggctcta
tattttcatcctcgaagggatgaaaagattggaagtggagctcaggacataaaggacata
aaggttagttcccaccccaagtaccagaatacacgttgctttgaattggtacgaatggat
gggacagttgaagatttttcgtaccacaagtgtgttcttggtgctcttgagatgattgat
cctcgaagggcaaaaaactacaaatcgaaatggttacaacacagtaatgtctaa

DBGET integrated database retrieval system