Carya illinoinensis (pecan): 122303798
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Entry
122303798 CDS
T08745
Name
(RefSeq) ATP-dependent helicase rhp16
KO
K15083
DNA repair protein RAD16
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cill03400
]
122303798
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
122303798
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
DEAD
zf-RING_5
zf-RING_UBOX
zf-Di19
Motif
Other DBs
NCBI-GeneID:
122303798
NCBI-ProteinID:
XP_042971695
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Position
3:complement(21783502..21803892)
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AA seq
935 aa
AA seq
DB search
MELRSRRRISSHPIDESSNVEVQQLSDDSSNEAGSDSEVYVLSDTSEEDEENGGRMDLDL
NKKPKSTIKVHDWEDDGYDYESYNEDLTMRKAGRKIVEHGEPSGVESMVEYGESGCEDNA
MHCGPIGGNRSSQQKAVEIDFIGLSKKKMHKKTTKNRVPKPRLLWNQWEEEHQRWIDENL
DEACLDNQNEIIAETSEAPLELIMPLLRYQKEWLAWALKQEKSPTRGGILADEMGMGKTI
QAIALVLAQRGTQKMICEPDESSVLQGPSKDLAGIKATLVVCPVVAVSQWVSEIDRFTSE
RSTKVLVYHGANRGKNSKHFGEYDFVITTYSIVEAEYRKYVMPPKKKCPYCGKAFYDSKL
SIHLKYFCGPDAIRTEKQSKQARKKSKTVISNQETEPAEDKMNEYDGKKRKGARKKTPYK
NNKEKDKGGIRFGNEHSAGVDGSPRGKSFLHAIRWERVILDEAHYIKARHCNTAKAVLAL
ESSYKWALSGTPLQNRVGELYSLVRFLRIIPYSFYLCKDCDCRTLDHSSSKECSNCPHSS
VRHFCWWNKYVATPIQTYGNSVEGRRAMTLLKYKILKTIVLRRTKKGRASDLALPPRIVS
LRRDTLDIKEQDYYESLYNDSQAQFNTYVQSGTVMNNYAHIFDLLTRLRQAVDHPYLVVY
SRTAALRSGNMANNDNTERVCGICHHPAEDNVVTACEHVFCKACLIDFCASLGQTSCPSC
SKLLTVDLTRNVDDGDQAAKTTIKGFRSSSILNRIQLDDFQTSTKMEALREEIRFMVERD
GSAKGIVFSQFTSFLDLINYSLHKSGIDCVQLVGSMSMSARDAAIKRFTEDPDCRIFLMS
LKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERIL
KLQEKKELVFEGTVGGSSEALGKLTEADMRFLFVT
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggagcttcgttctcgtaggcgaatctctagccatccgatagatgaatcaagcaatgtg
gaggtgcaacaactaagtgacgatagctcgaatgaagcaggctccgattcagaagtttat
gtgctatcggataccagcgaagaagatgaagagaatggagggagaatggatttggatttg
aacaagaaaccaaaaagtacaatcaaggttcatgattgggaagatgatggttatgattat
gagagttacaatgaggatttgacaatgaggaaggctggacggaaaatagtggagcatgga
gaaccaagtggggtagagagtatggtggagtatggagaatcgggttgcgaagataatgca
atgcattgtggacctataggcggaaaccgatcttctcagcaaaaagcagttgaaattgat
ttcatagggctgagcaagaagaaaatgcataaaaaaacaacaaaaaatagggtcccaaag
ccaagattattgtggaatcagtgggaagaagagcatcagagatggatcgatgaaaatttg
gatgaagcttgtttggataatcagaatgaaataattgctgaaacttctgaggctccattg
gaattgatcatgcctttgctaaggtaccaaaaggaatggttggcctgggctttgaagcag
gaaaaatctccaactagagggggaattcttgcagatgagatgggaatggggaagaccatt
caagcaattgcacttgtccttgcccaacggggaactcagaagatgatttgtgaaccggat
gaatcctctgtattacagggcccatccaaagacttggctggtattaaagctactcttgtg
gtttgtcctgtggttgctgtgagccaatgggtgagtgagattgataggtttacttcagag
aggagcaccaaggtgcttgtttatcatggggctaatagagggaagaattcgaaacatttt
ggagaatatgattttgtaattacaacgtattctattgttgaggctgaatacagaaagtat
gtgatgccacccaagaaaaagtgcccttactgtggcaaggcattttatgatagtaagctg
tcaattcacttgaaatatttttgcgggcctgatgctattagaacagagaagcagtctaaa
caagcaaggaaaaaaagcaaaactgtgatttcaaatcaggaaacagaacctgctgaagac
aagatgaatgaatatgatggcaagaaaaggaagggagctcgtaaaaagacaccatacaag
aacaacaaagaaaaggataaggggggaattagatttggaaacgaacattcagcaggtgta
gatggttctcccagaggaaaatcatttctgcatgctataaggtgggaacgagtaattctg
gatgaggcacattatataaaagctagacattgtaatactgcaaaagctgttcttgcttta
gagtcttcatacaaatgggccttaagtggcactccacttcagaaccgtgttggagaactt
tactctttggttcgcttcctgagaataataccatattctttctacttgtgtaaggactgt
gattgcagaacacttgatcatagttcttcaaaagaatgttccaactgtcctcatagttct
gtgagacatttttgttggtggaataagtatgttgctacaccaatacaaacatatggaaat
agtgttgagggacgaagagccatgactttgctcaaatacaaaattttaaagaccatagtg
ctaagacgcacgaaaaaaggcagggcctctgatctcgcacttcctcctagaattgtttca
ttgaggcgggataccctcgacatcaaagaacaagattattacgaatcattgtacaatgac
agtcaggcgcagttcaatacatatgttcagtcaggaactgtgatgaataactatgctcac
atatttgaccttctcacacgcttgcggcaggctgttgatcatccttacctagtggtatat
tctagaactgctgcactaagaagtggaaacatggcgaataatgacaatactgaacgagtg
tgtggcatctgtcatcacccagctgaagataatgtggtcactgcttgtgagcatgttttc
tgtaaggcttgtctgattgatttctgtgcttccttgggacaaacctcttgcccttcatgt
tcaaaattacttacggtcgatttaactagaaatgtggatgatggagatcaggctgctaaa
actaccattaaggggttcagatcctcaagcattctaaacagaatacaacttgatgatttt
cagacaagcacaaaaatggaggcattgagggaagaaattaggttcatggttgaaagggat
ggttctgcaaaaggaattgttttcagccagttcacatcattcttggatctcatcaattat
tccctccacaagtctggtatagattgtgtgcaattagttggaagcatgtccatgtctgca
agagatgctgctatcaagcggtttactgaggacccggattgtaggattttcctcatgagt
ttgaaagccgggggtgttgctttgaatcttactgttgcttcacatgtcttcttgatggat
ccgtggtggaacccagctgtggagcggcaagcacaagatagaatccaccggattgggcag
tataaaccaattagaatcgtgagatttgttattgagaatacaattgaggagaggattctg
aagctgcaagaaaagaaggaactcgtttttgaagggactgtaggtggttcatcagaggcc
cttgggaaattaaccgaggcagacatgagatttctatttgtcacctga
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