KEGG   Carya illinoinensis (pecan): 122307828
Entry
122307828         CDS       T08745                                 
Name
(RefSeq) RING-box protein 1a-like
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03420  Nucleotide excision repair
cill04120  Ubiquitin mediated proteolysis
cill04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    122307828
   04120 Ubiquitin mediated proteolysis
    122307828
  09124 Replication and repair
   03420 Nucleotide excision repair
    122307828
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cill04121]
    122307828
   03400 DNA repair and recombination proteins [BR:cill03400]
    122307828
Enzymes [BR:cill01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     122307828
Ubiquitin system [BR:cill04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   122307828
  Multi subunit type E3
   SCF complex
    Ring finger protein
     122307828
   Cul2 complex
     122307828
   Cul3 complex
     122307828
   Cul4 complex
     122307828
   Cul7 complex
     122307828
   Cul8 complex
     122307828
   Cul9 complex
     122307828
DNA repair and recombination proteins [BR:cill03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      122307828
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      122307828
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11 zf-RING_2 zf-C3HC4 zf-C3HC4_2 zf-RING_11
Other DBs
NCBI-GeneID: 122307828
NCBI-ProteinID: XP_042976865
LinkDB
Position
4:30251901..30257341
AA seq 117 aa
MASLDSDVPMVPAGEPSSSAGPSSSKKCKHFEIKKWNAVALWAWDIVVDNCAICRNHIMD
LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
NT seq 354 nt   +upstreamnt  +downstreamnt
atggcctccttggactccgacgtgcccatggtcccagccggcgagccttcaagcagcgcc
ggtccttcctcctccaaaaagtgcaagcacttcgagatcaagaagtggaacgccgtcgct
ctctgggcctgggatatcgtggtcgataactgtgccatttgcaggaaccatatcatggat
ctctgtattgagtgccaagctaatcaggctagcgccaccagcgaggaatgtacggttgct
tggggggtttgcaaccatgccttccatttccattgcatcagccgatggctcaaaactcgt
caagtgtgtcctttagataacagcgagtgggagtttcagaagtatggtcactag

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