Carya illinoinensis (pecan): 122313937
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Entry
122313937 CDS
T08745
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cill03036
]
122313937
03400 DNA repair and recombination proteins [BR:
cill03400
]
122313937
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
122313937
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
122313937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
CCDC22_CC
Motif
Other DBs
NCBI-GeneID:
122313937
NCBI-ProteinID:
XP_042985209
LinkDB
All DBs
Position
6:8838904..8878380
Genome browser
AA seq
1571 aa
AA seq
DB search
MPTVSVYLPCFASSSPFPSHSHSRAFSFPTFLFKPQRLDHPHFIGSHTAMEPDTGYRRAK
ANKRQLVELYEDDDDIDTVYRFKVLLPNGTSIGLTVRDIPLPEMPFGDFINLVKNEYFRA
RKLNESMKQKRKIDWEGDRFYLEDVNGLKIRDSIKLKDFKPHSCHILQLHDGSGVMANTF
ENMWDLTPDTDLLMELPEEYTFETALADLIDNSLQAVWSNRKNERRLISVNIASDDSISI
FDTGPGMDGSDENSIVKWGKMGASLHRSSKGQAIGGKPPYLRPFFGMFGYGGPSASMHLG
RRALVSSKTKSSCKVYTLHLEREALLSSSGSELSWKTTGGMRDPSEDELSKSPHGSFTKI
EIFELKRNSLDIFILQCKIKDIYFPYIQCDEVGNSAKTITPIEFQVNGDDLAEIEGGEVA
VTNLHSCNGPDFILQLRFSFKQANSAAKSPGSTASQEANARLKCVYFPSLKGKESFEMIL
EKLEAEGCSVTENYETFSRVSVRRLGRLLPDARWARLPFMDFRHKKGDKAHILKRCCWRV
KCFIDTDAGFNPTPSKTDLAHHSPFTAALKNFGNKLNEKEKFVDVEIYRDQKLLTPLQLE
REYQDWILQMHDRYDQETECGEDQPVLVVSPANKKALGISSDVVRVHKVLKRKGVSWKSG
QKIKILKGACAGCHKNNVYAELEYFLLEGFQGDAGGEARIILILFLLGTRPLGIPDDNGS
IVAFNHGDASFNICGSLSLPINVIDSGKCLAIGSIEWNCQVDKQHLKSHSIIDLLSVKQC
QELEIDGAPPVDGLVHAGQVPPTKIVAVVRPANFVSSSISKSLDQNSIVKSNLEMSMEIK
FREEAEDLRDVCHIYSRRVTPSSHHIYSKRITPSSRKGFHGLYIFPLGSKFPDLFQKAGV
YTFSFYVDELTCNNFDKEVLVKASSKVGKWDLLSDEQSPPLSVRVGSCFPPLCLTCNDIY
GNRIPFTSTPEVMIKLQTIKGVLVDVEKMRIELSPNKFTLKVEDILIESNELDKIRPNYE
ATLVICSRDKLYSVSFPCQVYPGSLQFVKARPPILDSQLLPGCIIKELVLEMFDAYDNHI
SQGLEVELAVEGFCMQDQIGSKRKVDDNGCIDLSGLLKVTAGYGRKVLLSVLSGHEVVFK
QEFQTQKQEMQITSGVSLVQSPKLEYDESQSPYSNEKVMLLDYSSSLKQSEKFIMPLITI
EKELEDEVLHIGLRIGNLEKELDFLYDRKAEIELDISQLQASFEPCLPNFPPTKDELINR
IQSNNHSAASVLCCLSREFSFQGLKNHFMEDIVGLVALLGTVRLNKLSRILAEYLGEDQM
LAVVCRSSAAASALEKFEHDGEVHCRHALHAQAAAHGKSIYGRFLIVCLEDIRAYKGEFE
GSDPQRKLALPYPTFPSGKVPMGFIGYAVNMIDLDVGHLHTRTAAGHGLRETLFYCLLRE
VQVYETVECMLEARHCIKHGAVSLDGGILRDNGIISLGFGNPQICFSVTAQESEPSKEFV
EIMKLIEENKSELRGVINSIEKLTRSLKKYMKKFKKKKGKYQKLMDDMEPVVKDYLEHKK
LCIGNTGSSSY
NT seq
4716 nt
NT seq
+upstream
nt +downstream
nt
atgccgactgtgtctgtttacttaccttgctttgcctcttcctctccctttccctctcac
tctcactcaagagccttttcatttccaacctttctttttaaacctcagaggctagaccac
ccccacttcatcggttcacatacagctatggaaccagatacggggtaccggagggcaaag
gcgaataagaggcaactggtagaactctatgaagacgatgatgatattgacacggtgtat
aggttcaaagtcctattaccaaatggcacaagtataggactaacagtgagggatatccct
cttcctgaaatgcctttcggggacttcattaatttggtgaaaaatgaatactttcgagct
cgtaagctgaatgaatcaatgaagcagaaaagaaaaatagattgggagggtgatcgcttt
tatcttgaggacgtgaacggtttaaagatcagagactcgattaaattaaaagattttaag
ccccacagttgtcacattttacagcttcatgatggctctggtgtgatggccaatactttt
gagaatatgtgggacttgacaccagatactgatttattaatggaattaccagaggaatac
acttttgaaactgcccttgcagatttgattgataattcgttgcaagcggtatggtctaac
cgtaagaatgaaagaaggctgatcagtgtgaatattgccagcgatgatagcatttctatt
tttgacaccggccctggaatggatggcagtgatgaaaactctatagtgaagtggggaaag
atgggtgcctcccttcacagatcctcaaaaggacaggcaattgggggaaaacctccatac
ttgaggcctttctttggaatgtttggatatggaggaccaagtgcgtctatgcatctaggg
aggcgtgctttggtatcttcaaagacaaaaagttcttgcaaagtctatactttacatctt
gaaagagaggccttactcagcagttctggttctgagcttagctggaagactactggtggc
atgagggatccctcggaagatgaacttagcaaatcacctcacgggagctttactaagatt
gagatttttgagctgaaaagaaatagcctggacatatttatactccaatgcaagatcaaa
gacatctattttccatacattcagtgtgatgaagtgggcaactcagcaaagacaattaca
ccgatagaatttcaggttaatggtgatgatttagctgaaattgaagggggagaggttgct
gtcaccaacctgcattcctgcaatggtcctgactttattctacagcttcgtttttccttt
aagcaagctaattctgcagccaaaagtccaggttcaacagcatctcaagaagccaatgca
cgcctgaagtgtgtttattttccatcccttaaggggaaagaaagttttgagatgattttg
gagaaactagaagctgaaggctgcagtgtcacagaaaactatgaaaccttcagtcgtgtc
tctgttcgacggcttggccgtttacttccggatgctcgctgggcacggcttccttttatg
gacttcaggcacaaaaagggagataaggcccatatactgaagagatgttgctggagggtt
aaatgctttattgacactgatgctggtttcaatccaacaccttctaagactgatctggcc
caccatagtccttttactgctgctctaaagaatttcggcaataagcttaatgaaaaagag
aagtttgttgatgttgaaatttatagagaccaaaaactgttgactcctttgcaactggag
agagagtatcaagattggattcttcagatgcatgatcgttatgatcaagaaactgaatgc
ggagaggatcaacctgttcttgttgtcagccctgcaaacaaaaaggctcttggcatatca
tctgatgtcgtacgggtgcacaaagttttgaaaaggaagggagtatcatggaaatctggt
caaaaaataaaaattctgaagggagcatgtgctggatgccataagaacaatgtctatgcg
gaactggaatacttcctgcttgaaggattccaaggggatgctggcggggaagctcgaatt
atattgatactgtttcttttgggtacaaggcccctaggcatcccagatgacaacggttcc
atcgttgcatttaaccatggggatgccagttttaatatttgtggctctttgtccctgcct
atcaacgtgattgattctggaaagtgcctagctattggaagtatcgagtggaattgccaa
gttgataaacaacatctgaaatctcattcaataattgatctgctcagtgttaaacaatgt
caagagctggagattgatggggcaccgcctgttgatggtctagttcatgctggacaagtt
cctccgacaaagattgtggctgttgtacggcctgccaattttgtttcttctagcatttca
aagagcttggaccagaattctattgtcaagagtaatttagaaatgtcaatggagattaaa
tttagagaagaagctgaggatcttcgagatgtgtgccatatttattcaaggcgtgtaaca
ccttcatctcaccatatttattcaaagcggataacaccttcatcacgtaaaggatttcat
ggtttatatatctttccattgggttccaagtttccagatttatttcaaaaagctggtgtt
tatacgttttcattctacgttgacgagttaacttgtaataattttgacaaagaagtgcta
gttaaggcatcttctaaggtgggaaagtgggatcttttgagtgatgaacagagtccacca
cttagcgtgagggtcggttcttgttttccacctctctgtttgacatgtaatgacatctat
ggcaatcgaattccttttacatcaacaccagaagtgatgatcaaacttcagacaatcaag
ggtgtccttgtcgatgtagagaaaatgaggatcgaactgtcacccaataaattcactctc
aaagttgaggatatactgattgaaagcaatgagttagacaagatccggccaaattatgaa
gcaactctggtgatatgctctagggataaattgtactccgtctcatttccgtgtcaagtt
taccctggatctttacaatttgtcaaggcccgaccaccaatattggatagccaactactt
ccaggctgtattatcaaggagctcgtattagagatgtttgatgcatatgataatcatatc
tcacaaggcttggaagttgaattagctgtggaaggattttgcatgcaagatcaaataggt
tcaaagcgtaaggttgatgataacggatgcattgaccttagtggccttctgaaagtaaca
gcaggctatggacgtaaagttttgctctctgttctgtctggccatgaagttgttttcaag
caagagtttcaaactcaaaaacaggagatgcagattacatctggggtctcccttgtgcaa
tccccaaaattggagtatgacgagagtcagtctccatattccaatgaaaaggtcatgctg
cttgattattcatcttctctaaaacaatcagaaaaatttatcatgccattgataactatt
gagaaggaacttgaggatgaagtactccacattggtttgcgcattggaaatctagagaag
gaactggattttctctatgataggaaggctgaaatagagctagacatatctcagttgcaa
gcttcttttgagccctgtcttccgaacttcccacccacaaaagacgaactgataaatcgg
atacaaagcaacaatcactctgcagcatctgtcctctgttgtctttcaagagaattctcc
tttcaagggctaaaaaaccatttcatggaagatatagttggcctggttgcacttcttggt
acagttcgcctcaataagcttagcaggatattagcagagtacttgggcgaagatcaaatg
cttgctgttgtctgtagatcctctgcagctgcaagtgctcttgagaagtttgaacacgat
ggagaagtgcattgtagacatgctcttcatgcacaagcggctgcacatggaaaatctata
tatggtcgatttcttattgtatgccttgaagatataagggcttacaagggagagtttgaa
ggtagtgaccctcagaggaagcttgccttgccgtatcctacctttccaagtgggaaggtg
ccaatgggtttcattggttatgcagttaatatgattgacttggacgttggtcatttacac
acaagaactgctgcgggccatggccttcgggagaccttattctattgtcttctaagggag
gtccaagtatatgaaacagtggaatgcatgttagaagcccgacattgtataaagcatggt
gctgtctctctggatggtgggattttaagagacaatggaatcatttctcttggatttggg
aatcctcagatatgcttttcagttaccgcacaagagagcgagccctcgaaggaatttgtg
gagatcatgaagcttattgaagaaaataagtctgagttgaggggggtgatcaattctata
gagaagttgaccagatcccttaagaaatatatgaagaaattcaagaagaaaaaagggaag
tatcagaagcttatggatgatatggagccagtagtaaaagactatctggaacacaagaag
ctctgcatagggaacacaggctcctcatcgtactga
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integrated database retrieval system
