Carya illinoinensis (pecan): 122315581
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Entry
122315581 CDS
T08745
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
122315581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122315581
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
122315581
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
122315581
NCBI-ProteinID:
XP_042987508
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All DBs
Position
7:complement(881756..897216)
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AA seq
972 aa
AA seq
DB search
MGVPAFYRWLADRYPQSIVEVVEEEPAGKNGVDVSKPNPNGIEFDNLYLDMNGIIHPCFH
PEGKPSPTTYNDVFKSIFNYIDHLFSLVRPRRLLYLAIDGVAPRAKMNQQRSRRFRAAKD
AAEAEAEEERLRKEYEAEGRSLTAKETPETSDSNVITPGTQFMAVLSVALQYYIQSRLNH
NPGWRYTKVILSDSNVPGEGEHKIMSYIRLQRDLPGFNPNTRHCLYGLDADLIMISLATH
EVHFSILREVVTLPGHQERCFLCGQVGHLAAECRGRPGNEAENLNAVDDTPIHKKKYQFL
NLWVLREYLQYDMEIPNPPFEINFERVVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLM
HVYRSEFAAMGGYLTDAGEVLLDKVEHFIQSVAVYEDQIFQKRARIQQAFENNEEMKHKS
RRVTSEELQAPAVDKIKLGEPGYKERYYAEKFNVSDLEEIDKVKKDLVLKYVEGLCWVCR
YYYQGVCSWQWFYPYHYAPFASDLKDLVDLEITFFLGEPFKPFDQLMGTLPAASSSALPE
KYRKLMTDPTSPILQFYPSDFEVDMNGKRFAWQGVVKLPFIDEKKLLAATKKLEGTLTEE
EKVRNSMMFDLLYVHPGHPMGSQIIQYYRIYFHLPPHERFLWEIDTNASGGMNGYLWLTE
RNNIKSIVPSPVSGLQDIYNNQILNITYLNPRSHKHIPEPSKGVVMPKKVLTPIDVKPFP
VLWHEDNTGFRRQHGRERPQVPGAIAGPLLGEAAHRLVKNTLNIKTNDPSARFWEQSSYQ
NFPGNHTVSRPRSNGSSGYQRGFTEDPNHYHGHYNNFQGMTGRPRLHLISNGVQGDRQTY
RTQDRSQHQEQLRNLRTGVSALTIEESARTRPPAMMSPRPPAMMLPRMPNLGHATNLPNQ
LVQNVGAPPTPPPNWINKVPTANGPIYTRQQENESWGTYEKPVKKVYQVKTCIPQDMSDS
GNYFQNTSGTGH
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttcctgctttttatcggtggctggctgaccggtacccgcagtctattgttgaa
gtggtggaggaagagccggccggaaagaatggggtcgatgtgtcgaaaccgaatcctaat
ggcatagagtttgataacttgtatctggacatgaacgggatcattcacccttgctttcac
cccgagggcaagccttcacctaccacctacaatgatgtattcaaatcaatatttaattac
attgatcatctcttctcattagttcgtccaaggaggcttctttatttggcaattgatggg
gttgcaccaagggctaaaatgaatcaacaacgttctcggcgcttccgagctgcaaaagat
gcggctgaggcagaagctgaggaggaaaggctaaggaaagaatatgaagctgaggggaga
agtttgaccgctaaagaaacgcctgaaacttctgactcaaatgttattactcctggaact
caattcatggcagtgctctcagtagcacttcagtactatatacaatctagattgaatcac
aacccagggtggcgatatacaaaggttattctttctgactcaaatgtaccgggtgagggg
gagcacaaaatcatgtcatacatccgattgcaacgtgaccttcctggtttcaatccaaac
actcgccattgtctatatggtctggatgcagatctgattatgatatcattagctacacat
gaggttcatttttctattttaagagaggtggttacgctgcctgggcaccaggaaagatgt
tttctctgtggtcaggttggtcatctggcagctgaatgtcgtggtaggccaggtaatgaa
gctgaaaatctgaatgcagtggatgatactccaattcacaagaagaaatatcagtttctc
aatctgtgggtgttacgagagtatttgcaatatgatatggagattcccaaccctccattt
gagatcaactttgaacgggttgtagatgattttgtttttctgtgcttttttgttggcaat
gactttcttccacatatgccaacattggagatccgggagggtgccataaatttactgatg
catgtttatagaagtgagtttgctgctatgggtggttatcttactgatgcgggtgaggtt
ttgttagataaggtagaacattttatccagtctgttgctgtttatgaagatcaaatcttt
cagaagcgggctagaattcagcaggcttttgagaataatgaagaaatgaaacataaatca
agaagagtgacttctgaagagctacaggctccagcggtagacaagatcaagcttggggag
cccggatacaaagaaaggtattatgctgagaagtttaatgtatcagatttggaggaaatt
gacaaagttaaaaaagatttagtattaaagtatgtggaaggtttatgttgggtctgccgg
tattactaccaaggcgtttgctcctggcaatggttttatccctaccattatgctcctttt
gcttctgatctcaaagatcttgttgatttggaaattacttttttcttgggagagcctttt
aaaccttttgatcagctcatggggacactgccagcagcaagttcaagtgctctgccagaa
aaatacagaaaattgatgactgaccctacatcacctatccttcaattctatccatctgat
tttgaggttgacatgaatggcaagcgctttgcatggcagggtgttgtcaagttgccgttc
attgatgagaagaagttgcttgctgcaacaaagaagcttgaaggaactttaacggaggaa
gagaaggttcggaatagcatgatgtttgatttactttatgtacatcctggtcatcctatg
ggttcacaaattatccagtattatagaatatatttccatttacccccacatgagagattt
ctttgggagattgacacaaatgctagtggtggaatgaatggatacctttggttaactgag
agaaataatataaaaagtatagtcccttcccctgtcagtggattgcaagacatatataac
aaccaaatcttaaatataacataccttaatcctcggagccacaagcacatcccagaacct
tcaaaaggtgtagtcatgcccaaaaaggttttaacaccaattgatgttaaaccattccct
gtgttatggcatgaagacaacactggtttccggcggcagcatggcagagaaaggccacaa
gtccctggagcaatagcaggtccattactgggagaggcagctcatcgccttgtaaagaac
acacttaacatcaaaactaatgatccatctgccagattttgggagcaatcgtcttatcaa
aacttcccaggcaaccatacagtcagcagaccgaggtcgaatggatcctctgggtaccaa
aggggctttactgaagacccaaatcattaccacggacactacaataattttcaagggatg
acgggtagacctaggttgcacctcatatcaaatggtgtgcaaggtgacaggcagacttat
aggacgcaagatagatcacaacatcaagaacagctccgcaacctgaggactggggtttct
gctttgacaatagaagaaagtgcgagaaccagaccacctgcaatgatgtcacctaggcca
cctgcaatgatgttaccaaggatgccaaatttaggacacgcaacaaatctacccaaccag
cttgtgcagaatgtgggggctcctccaacaccaccccccaattggatcaataaagtacca
actgcaaatggcccaatatatactaggcaacaagagaatgaatcctggggaacttatgag
aagccggtgaagaaggtttaccaggttaaaacttgtattccccaggatatgtcagattct
ggaaactatttccagaatacgtcaggtactggacattag
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