Carya illinoinensis (pecan): 122318279
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Entry
122318279 CDS
T08745
Name
(RefSeq) transcription factor PIF3-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04075
Plant hormone signal transduction
cill04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122318279
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
122318279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cill03000
]
122318279
Transcription factors [BR:
cill03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
122318279
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
Glyco_trans_1_2
Motif
Other DBs
NCBI-GeneID:
122318279
NCBI-ProteinID:
XP_042991437
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Position
8:9880884..9884018
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AA seq
562 aa
AA seq
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MSGDDFVEMVWENGQILMRDRSGRTFKAREWRSRYALYPSNAQAEDGGNMHRKRARLETT
YSTLKDTTSLDCRDSDLHFPDNDSSQTGYHSKSSSDLYQHLKLEANRSKGDDKNSTNPQI
NGRGPDNANFRPSNASSFHCQELDTLLGPREKNPRKTPESIAGLHISNSMEHDLNLNTKT
GTVMNFSYLRPEVLLKASTPVLARVQEMKSSNDERPPLGSRNPRESTMIWQASGSKRSAT
GPENQPEKELTPPVAETQESLPHEQHPEAFCNTRINLHNSHDQLPDQTSSALAANTPKGK
PAVTSFSVCSLEASNDPTYSLRTYEDHTEESEYHLSPPISIALRSCPTSLQKVGEPESCF
KKQAPARSCGGGKRSRTTEVHSLSEKRHREKVKEKMRVLKGLIPNCDKVDKVSMLDEAIE
YLKTLQLQLQIMSMGNNGAYHVPSTMLPAGMQHFMNAVPHLTYFSPMGAGMYMGMGCSPL
YPPNSQVGATALPGITGNSNQLMHGFLGQPFPMPISDASFLPSLGRLSAGQSVRSGPACP
LWSLPFTRIDQQDMLAHVHRYP
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtctggggatgactttgtggagatggtatgggaaaatggtcagattcttatgcgagat
cgctcgggtagaacgttcaaggctagagaatggaggtctcgttacgctttatatccttcc
aatgctcaggcagaagatgggggaaacatgcacagaaagagagcaaggctagaaaccacg
tattcgactttgaaagacaccacttccttagattgcagggattctgatctgcactttcct
gataatgattcttcacaaactggatatcattctaaatcatcttccgatctgtatcaacac
ctaaagttggaagctaatagaagtaagggcgatgataagaattccacaaatccccagata
aatggtcgaggaccagacaatgcaaatttcagacctagtaatgcatcttccttccattgc
caagaattggacacgctcctaggcccaagagaaaagaacccaaggaagaccccagagtca
atagccggactgcacatatcaaactctatggagcatgatttaaaccttaatacgaaaacc
gggaccgtgatgaacttctcctacttacgacccgaagttcttcttaaagctagtactcca
gttttagcacgagttcaggagatgaaaagtagcaacgatgagaggcctcctctaggtagt
agaaaccctcgtgagtcaacaatgatttggcaggctagcggttcaaaaagatcagccaca
ggtcctgagaatcaacctgaaaaggagctaactccacctgttgccgagacacaagagtca
ctccctcatgagcagcaccctgaagctttttgcaatacaaggattaacttgcataattcc
cacgaccaacttccagatcaaacctcaagcgccttagcagcaaatacaccaaaaggaaag
ccagccgtgacatctttttcagtatgctcacttgaagcttcgaatgatccaacgtattct
ttgaggacatatgaggatcacactgaggagtcggaatatcatttatccccgcctatctcc
attgctttaagaagctgtccaacttcactgcagaaggttggagaaccggagtcatgtttt
aaaaaacaggcgccagcccgtagctgtggtggtggcaagagaagccgaactaccgaagtt
catagtttatctgaaaagaggcatagagaaaaggttaaagaaaagatgcgtgtattgaag
ggactgatacccaactgcgataaggtggataaagtttccatgcttgatgaggccatcgag
tatctgaaaaccctacagcttcaactacagattatgtcaatgggaaataatggtgcgtat
catgtgccttcaactatgttacctgctgggatgcaacatttcatgaatgcagtaccgcat
ttgacatatttctctcccatgggtgctgggatgtacatgggaatgggttgcagcccatta
tatccccctaattcacaagtaggagccactgctcttcctgggatcacaggaaacagcaat
caattaatgcatggatttcttggtcaaccatttccgatgccaatttcagatgcatccttc
cttccttcgcttggaaggctgtctgccggccaatcagttcgatctgggccggcctgtcct
ctctggagcctcccctttacaagaattgatcagcaagacatgttggctcatgtacaccgg
tacccttag
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