KEGG   Carya illinoinensis (pecan): 122318955
Entry
122318955         CDS       T08745                                 
Name
(RefSeq) 5'-3' exoribonuclease 4-like
  KO
K20553  5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill04016  MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:cill00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04016 MAPK signaling pathway - plant
    122318955
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cill03019]
    122318955
Messenger RNA biogenesis [BR:cill03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     122318955
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC
Other DBs
NCBI-GeneID: 122318955
NCBI-ProteinID: XP_042992671
LinkDB
Position
8:37846846..37866511
AA seq 992 aa
MGVPAFYRWVADRYPQSIVDVAEEEPAGETGVDVSKPNPNGMEFDNLYLDMNGIIHPCFH
PDGKPPPTTYDDVFKSIFGYIDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAKD
ASEAEAEEERLRKEYEDEGRSLTPKEKPETSDSNVITPGTQFMAVLSVALQYYIQSRLNR
NRGWQYTKVILSDSNVPGEGEHKIMSYIRFQRGLPGFNPNTRHCLYGLDADLIMLSLATH
EVHFSVLREVVTLPGHQEKCFLCGQVGHLAAECRGRPGDKAIDQNAVDDAPIHKMKYQFL
NLWVLREYLQYELDIPNPPFQINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLM
HVYRTEFAAMGGYLTDAGEVFLDKVEHFIQCVSVYEDQIFQKRARIQQSYENNEEMRLRS
RRESSEQLQAPVVDKVKLGEPGYKERYYAEKFNVSDLEEIDKIKKDLVLKYVEGLCWVCR
YYYQGVCSWQWFYPYHYAPFASDLKDLIDLEITFFLGEPFKPFDQLMGTLPAASSSALPD
KYRKLMTDPSSPILEFYPSEFEVDMNGKRFAWQGVVKLPFIDEKKLVAATRKLEVTLSEE
EKGRNSVMLDLLYVHPAHPLASQIIQYYRICFQLDLHEKFVWPIDQSASGGMNGYLWLCE
RNNIKNVVPSPVNGLQDLDNNRVINVTFLHPRNHRHMTEPPKDVVMPKKVLTPLDIKPFP
VLWHEENSFRRHQGRERPRVPGAIAGPLLGEAAHRLVKNTLNIKTNGSSPGYWEQSSYQN
FSGNHMVNRTRPVGPSGYQRGFTEDPNYYQGHHNNFQGMIGRPRLHLSNGVQGERQNFRT
QDRSQYQEQSRNLRAGVSALTIEESVRTRPPTVMSPRPTAMILPRMPNLGHPTNLPNQFM
QNTGAPPTPPQKWINKSPAVNGEIYTRQQENASWGTYEKQVKKVYQIKTRSPEDMPDAGD
SLQDMSGYENHLQDRSYFGNNFQTMPGSGHQQ
NT seq 2979 nt   +upstreamnt  +downstreamnt
atgggcgtgcccgcgttttatcggtgggtggctgaccggtatcctcagtctattgttgac
gtggccgaggaggaaccggctggcgagactggtgtcgacgtgtcgaaacctaaccccaat
ggcatggagttcgataacttgtacttggacatgaatgggatcattcacccttgcttccac
cccgatggcaagcctccacctaccacctatgatgatgtattcaaatcaatatttggttat
atcgaccatctcttctcattagttcgcccaaggaagcttctttatttggcaatcgatggg
gttgccccaagagctaaaatgaatcaacaacgttctcggcgtttcagagccgcaaaagat
gcatctgaggcagaagctgaagaggaaaggttgaggaaagaatatgaggatgaggggaga
agtttgacccctaaagaaaagcccgaaacttctgattcaaatgttatcactcctggaact
cagtttatggcagtgctttcggtagcacttcagtactatatacaatctaggttgaaccgc
aaccgtggttggcagtatacaaaggttattctttctgattcaaatgtcccgggtgagggt
gaacacaaaatcatgtcatacattcgattccagcgtggccttcctggtttcaatccaaac
acccggcattgtctatatggtctggacgcggatctgattatgctatcattagctacacat
gaggttcatttttcagtattgagagaggtggttacactgcccgggcatcaggaaaaatgt
tttctatgtggtcaagttggtcatctggctgctgaatgtcgtggtaggccaggtgataaa
gctatagatcagaatgcagtagatgatgccccaattcacaagatgaaatatcagttcctc
aacttatgggttttacgagaatatctgcaatatgagttggacattcccaaccctccattt
cagattaactttgaacgaattgtggatgattttgtatttctgtgctttttcgttggtaat
gactttcttccacatatgccgacattggagatcagggagggggctataaatttactgatg
catgtttatagaactgagtttgctgctatgggtggttatcttactgatgcgggcgaggtt
tttctagataaggtagaacattttatccagtgtgtttctgtttatgaagatcaaatcttt
cagaagcgggctcgaattcagcagtcttatgagaataacgaagagatgagacttagatcg
agaagggagtcttctgaacagctacaggcaccagtggtagacaaggtcaagctgggggag
ccaggatacaaagaaaggtattatgccgagaaatttaatgtctcagacctggaggaaatt
gacaaaattaaaaaagacttggttttgaagtatgtggaaggtttatgttgggtctgccgg
tattactaccaaggcgtttgctcctggcaatggttttatccttaccattatgctcctttt
gcatctgatctcaaagatcttattgatttggaaataacctttttcttgggggagccattt
aaaccttttgatcagctcatgggaaccctgccagcagcaagttcaagtgctctgccagac
aaatacagaaagttgatgactgacccatcatcaccaatacttgaattctatccttctgaa
tttgaggttgacatgaatggcaagcgctttgcatggcagggtgttgtcaagttgccattc
attgatgagaagaagttggttgctgcaacaaggaagcttgaagtcaccttatcggaggaa
gagaagggtcggaacagtgtaatgcttgatttgctttatgtacatcctgctcatcctttg
gcttcacaaattattcagtattatagaatatgctttcagttagacctacacgagaaattt
gtttggccaattgatcaaagtgccagtggtggaatgaacggttacctttggttatgtgag
agaaacaatataaaaaatgtggtcccttcccctgtaaatggattgcaagaccttgataat
aaccgagtcataaatgtaacatttcttcatcctcgaaaccatagacacatgacagaacct
ccaaaggacgtggtcatgccaaaaaaggttttaacacccttagatattaaaccattccct
gtgttatggcatgaagaaaatagttttcggcggcatcaaggcagagaaaggccacgagtc
cctggagcaatagcgggtccattactgggagaagcagcacatcgccttgtaaagaacacg
cttaacatcaaaactaatggttcatcccctggatattgggagcaatcatcatatcagaac
ttttcaggcaaccatatggtcaacagaacgaggccggttggaccctctgggtaccaaagg
ggctttaccgaagacccaaattattaccaaggacaccacaataatttccaagggatgata
ggtaggcctaggttgcacctatcaaatggtgtgcaaggtgaaagacagaattttaggaca
caagatagatcacaatatcaagaacagtcccgcaatctgagggctggggtatctgctttg
acaatagaagaaagtgtgagaaccagaccacctacagtgatgtcacctagaccaactgca
atgatattaccgaggatgccaaatttaggacatccaacaaatctacccaaccagtttatg
cagaacacgggggctcctccaacaccaccccaaaagtggattaataagtcaccggctgta
aatggtgaaatatatactagacaacaagagaatgcatcttggggaacatatgagaagcag
gtgaagaaagtttatcagattaaaactcgcagtcccgaggatatgccagatgctggagac
agtctccaggatatgtcaggttatgaaaatcatctccaggataggtcatattttggaaac
aatttccagacaatgccaggttctggacatcagcaatga

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