Carya illinoinensis (pecan): 122318955
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Entry
122318955 CDS
T08745
Name
(RefSeq) 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
122318955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122318955
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
122318955
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
122318955
NCBI-ProteinID:
XP_042992671
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All DBs
Position
8:37846846..37866511
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AA seq
992 aa
AA seq
DB search
MGVPAFYRWVADRYPQSIVDVAEEEPAGETGVDVSKPNPNGMEFDNLYLDMNGIIHPCFH
PDGKPPPTTYDDVFKSIFGYIDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAKD
ASEAEAEEERLRKEYEDEGRSLTPKEKPETSDSNVITPGTQFMAVLSVALQYYIQSRLNR
NRGWQYTKVILSDSNVPGEGEHKIMSYIRFQRGLPGFNPNTRHCLYGLDADLIMLSLATH
EVHFSVLREVVTLPGHQEKCFLCGQVGHLAAECRGRPGDKAIDQNAVDDAPIHKMKYQFL
NLWVLREYLQYELDIPNPPFQINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLM
HVYRTEFAAMGGYLTDAGEVFLDKVEHFIQCVSVYEDQIFQKRARIQQSYENNEEMRLRS
RRESSEQLQAPVVDKVKLGEPGYKERYYAEKFNVSDLEEIDKIKKDLVLKYVEGLCWVCR
YYYQGVCSWQWFYPYHYAPFASDLKDLIDLEITFFLGEPFKPFDQLMGTLPAASSSALPD
KYRKLMTDPSSPILEFYPSEFEVDMNGKRFAWQGVVKLPFIDEKKLVAATRKLEVTLSEE
EKGRNSVMLDLLYVHPAHPLASQIIQYYRICFQLDLHEKFVWPIDQSASGGMNGYLWLCE
RNNIKNVVPSPVNGLQDLDNNRVINVTFLHPRNHRHMTEPPKDVVMPKKVLTPLDIKPFP
VLWHEENSFRRHQGRERPRVPGAIAGPLLGEAAHRLVKNTLNIKTNGSSPGYWEQSSYQN
FSGNHMVNRTRPVGPSGYQRGFTEDPNYYQGHHNNFQGMIGRPRLHLSNGVQGERQNFRT
QDRSQYQEQSRNLRAGVSALTIEESVRTRPPTVMSPRPTAMILPRMPNLGHPTNLPNQFM
QNTGAPPTPPQKWINKSPAVNGEIYTRQQENASWGTYEKQVKKVYQIKTRSPEDMPDAGD
SLQDMSGYENHLQDRSYFGNNFQTMPGSGHQQ
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtgcccgcgttttatcggtgggtggctgaccggtatcctcagtctattgttgac
gtggccgaggaggaaccggctggcgagactggtgtcgacgtgtcgaaacctaaccccaat
ggcatggagttcgataacttgtacttggacatgaatgggatcattcacccttgcttccac
cccgatggcaagcctccacctaccacctatgatgatgtattcaaatcaatatttggttat
atcgaccatctcttctcattagttcgcccaaggaagcttctttatttggcaatcgatggg
gttgccccaagagctaaaatgaatcaacaacgttctcggcgtttcagagccgcaaaagat
gcatctgaggcagaagctgaagaggaaaggttgaggaaagaatatgaggatgaggggaga
agtttgacccctaaagaaaagcccgaaacttctgattcaaatgttatcactcctggaact
cagtttatggcagtgctttcggtagcacttcagtactatatacaatctaggttgaaccgc
aaccgtggttggcagtatacaaaggttattctttctgattcaaatgtcccgggtgagggt
gaacacaaaatcatgtcatacattcgattccagcgtggccttcctggtttcaatccaaac
acccggcattgtctatatggtctggacgcggatctgattatgctatcattagctacacat
gaggttcatttttcagtattgagagaggtggttacactgcccgggcatcaggaaaaatgt
tttctatgtggtcaagttggtcatctggctgctgaatgtcgtggtaggccaggtgataaa
gctatagatcagaatgcagtagatgatgccccaattcacaagatgaaatatcagttcctc
aacttatgggttttacgagaatatctgcaatatgagttggacattcccaaccctccattt
cagattaactttgaacgaattgtggatgattttgtatttctgtgctttttcgttggtaat
gactttcttccacatatgccgacattggagatcagggagggggctataaatttactgatg
catgtttatagaactgagtttgctgctatgggtggttatcttactgatgcgggcgaggtt
tttctagataaggtagaacattttatccagtgtgtttctgtttatgaagatcaaatcttt
cagaagcgggctcgaattcagcagtcttatgagaataacgaagagatgagacttagatcg
agaagggagtcttctgaacagctacaggcaccagtggtagacaaggtcaagctgggggag
ccaggatacaaagaaaggtattatgccgagaaatttaatgtctcagacctggaggaaatt
gacaaaattaaaaaagacttggttttgaagtatgtggaaggtttatgttgggtctgccgg
tattactaccaaggcgtttgctcctggcaatggttttatccttaccattatgctcctttt
gcatctgatctcaaagatcttattgatttggaaataacctttttcttgggggagccattt
aaaccttttgatcagctcatgggaaccctgccagcagcaagttcaagtgctctgccagac
aaatacagaaagttgatgactgacccatcatcaccaatacttgaattctatccttctgaa
tttgaggttgacatgaatggcaagcgctttgcatggcagggtgttgtcaagttgccattc
attgatgagaagaagttggttgctgcaacaaggaagcttgaagtcaccttatcggaggaa
gagaagggtcggaacagtgtaatgcttgatttgctttatgtacatcctgctcatcctttg
gcttcacaaattattcagtattatagaatatgctttcagttagacctacacgagaaattt
gtttggccaattgatcaaagtgccagtggtggaatgaacggttacctttggttatgtgag
agaaacaatataaaaaatgtggtcccttcccctgtaaatggattgcaagaccttgataat
aaccgagtcataaatgtaacatttcttcatcctcgaaaccatagacacatgacagaacct
ccaaaggacgtggtcatgccaaaaaaggttttaacacccttagatattaaaccattccct
gtgttatggcatgaagaaaatagttttcggcggcatcaaggcagagaaaggccacgagtc
cctggagcaatagcgggtccattactgggagaagcagcacatcgccttgtaaagaacacg
cttaacatcaaaactaatggttcatcccctggatattgggagcaatcatcatatcagaac
ttttcaggcaaccatatggtcaacagaacgaggccggttggaccctctgggtaccaaagg
ggctttaccgaagacccaaattattaccaaggacaccacaataatttccaagggatgata
ggtaggcctaggttgcacctatcaaatggtgtgcaaggtgaaagacagaattttaggaca
caagatagatcacaatatcaagaacagtcccgcaatctgagggctggggtatctgctttg
acaatagaagaaagtgtgagaaccagaccacctacagtgatgtcacctagaccaactgca
atgatattaccgaggatgccaaatttaggacatccaacaaatctacccaaccagtttatg
cagaacacgggggctcctccaacaccaccccaaaagtggattaataagtcaccggctgta
aatggtgaaatatatactagacaacaagagaatgcatcttggggaacatatgagaagcag
gtgaagaaagtttatcagattaaaactcgcagtcccgaggatatgccagatgctggagac
agtctccaggatatgtcaggttatgaaaatcatctccaggataggtcatattttggaaac
aatttccagacaatgccaggttctggacatcagcaatga
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