Cebus imitator (Panamanian white-faced capuchin): 108302473
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Entry
108302473 CDS
T08783
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cimi
Cebus imitator (Panamanian white-faced capuchin)
Brite
KEGG Orthology (KO) [BR:
cimi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cimi03036
]
108302473 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
cimi03400
]
108302473 (SMCHD1)
Chromosome and associated proteins [BR:
cimi03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
108302473 (SMCHD1)
DNA repair and recombination proteins [BR:
cimi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
108302473 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_5th
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_2nd
Ig_SMCHD1_7th
Ig_SMCHD1_6th
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
HATPase_c
Big_1
DUF3447
Motif
Other DBs
NCBI-GeneID:
108302473
NCBI-ProteinID:
XP_017381557
Ensembl:
ENSCCAG00000030527
UniProt:
A0A2K5RCD6
LinkDB
All DBs
Position
Unknown
AA seq
1917 aa
AA seq
DB search
MAAADGGGPGGASVGTVEDGGGVGHRTVYLFDRREKESELGDRPLQVGERSDYAGFRATV
CQTLGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPH
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGVRRIQIKLLFDETQGKPAV
AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITN
DDERFLHHLIIEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGN
EIRTSKEVGPFNNIDIEISMFEKGKTPKIVNLREIQDDMQTLYINTAADSFEFKAHVEGD
GVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRL
IPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGTITRPDLPSKKQGPWATYS
AIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGDVYATGGEVQIAMEPQALYDE
VKTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKME
NIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSLGLLDPPFRVGVP
FSIPLEFQDEFGHTSQLVTDIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGK
NYNLKVILPGLKEDSQILKIRLLPGHPRRLKVKPDSEILVIENGTAFPFQVEVLDESGNI
TAQPKLIVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKARIEIPSCKD
VAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMHNLIFQMYDEGERE
INITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFT
VRPLPDEPKHLKCELKGGKTVQMGQELQGEVVIIITDQYGNQIQAFSPSSLSALSVAGVG
LDSSNLKTTFQENTQSITVRGIRFIPGPPGNKDLCFTWREFSDFIRVQLTSGPPAKLLFI
DWPELKESIPVINGRDLQNPIIVQLCDQWDNPAPVPHVKISLTKASNLKLTPSNQQHKTD
EKGRANLGVFSVFAPRGEHTVQVKAIYNKSIIEGPVIKLMILPDPEKPVRLNVKYDKDAS
FLAGGLFTDFMISVISEDDSIIKNINPARISMKMWKLSTSGNRPPANAETFSCNKIKDND
KEDGCFYFRDKVIPNKVGTYCIQFGFMMDKTNILNSEQIIVDVLPNQPVKLVPKIKPPTP
AVSNVRSVASRTLVRDLHLGITDDYNNHTGIDLVGTIVATIKGSNEEDTDTPLFIGKVRT
LEFPFVNGSAEIMSLVLAESSPGRDSTEYFIIFEPRLPLLSRTLEPYILPFMFYNDVKKQ
QQMAALTKEKDQLSQSIIMYKSLFEAGQQLLNEMKCQFEEARLKEAQLRNELKIHNIDIP
TTQQVPHIETLLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMV
ISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHFRNGKLY
FKPIGDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLL
TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIGMLNKYLNSNF
NT seq
5754 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggacggcggcgggcccggcggggcctctgtggggacagtggaggatggc
ggaggcgtgggccacagaacggtgtacttgtttgaccggcgcgaaaaggagtctgagctc
ggggaccggcctctgcaggtcggggagcgctcggactacgcgggattccgcgccactgtg
tgtcagacacttggcatttcacctgaagaaaaatttgttattacaacaacaagtaggaaa
gaaattacctgtgataattttgatgaaactgttaaagatggagtcaccttatacctgctg
cagtcagtcaatcagttactactgacagctacaaaagaacgaattgacttcttacctcac
tatgacacactggttaaaagtggcatgtatgaatattatgcaagtgaagggcaaaatcct
ttgccatttgctcttgcagaattaattgacaattcattgtctgctacttctcgtaacact
ggtgtcagaagaatacagatcaaattgctttttgatgaaacacaaggaaaacctgctgtt
gcagtgatagataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtat
aggttatcaaaatttacaaggcaaggtgactttgaaagtgaccattcaggatatgttcgt
ccagtaccagtgccacgcagtttaaatagtgatatttcctattttggtgttggcggcaag
caagctgtcttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaa
gatgttcacgagcttgtgctttctaaagaagattttgagaagaaggagaaaaataaagag
gcaatatatagtggatatattagaaacagaaagccctctgattctgttcacattacaaat
gatgatgaaagatttctacatcatcttatcatagaggagaaggaaaaagatagctttact
gctgtggttatcacaggggtacaaccagaacatatacagtacttgaaaaattatttccat
ctttggacacgacagttagcgcatatttatcattactatattcatggcccaaaaggaaat
gaaatacgaacatcaaaagaagttggacctttcaacaacatcgatattgaaatttctatg
tttgaaaaagggaagacacctaagattgtcaacctaagggaaatacaagatgacatgcag
acgttgtatataaacacagcagctgatagttttgagttcaaggctcatgttgaaggagac
ggtgtagtggaaggaattatccgttatcatccattcttatatgatagagaaacttaccct
gacgatccgtgttttccatcaaaattaaaagatgaagatgatgatgatgattgtttcata
cttgagaaagcagctagagggaaaaggcctatttttgaatgtttttggaatggacgatta
ataccatatacatcagttgaagactttgactggtgtactcctcctaagaagagagggctt
gcaccaattgaatgctacaatagaatatctggtgcattattcactaatgacaaattccag
gtcagcacaaataaactgacgtttatggatcttgagctaaaattgaaagataagaacact
ctttttacaaggattttaaatggacaggaacaacgaatgaaaattgacagagaatttgct
ctatggctgaaggactgtcatgaaaagtatgataaacaaataaaatttacactttttaag
ggaacaattacacgtcctgatcttccttctaaaaagcaaggtccctgggcaacatattca
gcaatagaatgggatggaaagatatacaaagcaggacagctggtcaagacaatcaagaca
cttcccctcttttatggaagcatagtaagatttttcctttatggtgatcatgatggagat
gtatatgctacaggaggagaggttcaaattgcaatggaacctcaggcactgtatgatgaa
gtaaaaacagtaccaattgcaaagctggataggacagttgctgagaaagctgtcaaaaaa
tatgtagaagatgaaatggcaaggctccctgacagattatcagtaacttggcctgaaggg
gatgaattattgcctaatgagattaggcctgctggaacccctattggtgcattaagaatt
gaaatactgaataaaaagggggaagcaatgcaaaagcttccaggaacaagtcatggaggg
tcaaagaaactcctggttgagctcaaagttattttacattcttcaagtggaaataaagag
attatttcacatattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaa
aatattcagaagttggggaattatacattgaaattacaagttgtattgaatgaaagtaat
gcagacacttatgcaggaagaccactaccatccaaagcaattaagttttctgtgaaagag
ggtaagccagagaaattttcacttggtcttctggatcctccttttcgtgttggcgttcca
ttcagtatccctctggaatttcaggatgaatttggtcataccagtcaactagtaactgat
attcagccagttctcgaagcaagtggtttatctttacattatgaagaaataaccaaagga
ccaaattgtgtaattcgaggtgttacagctaagggccctgtaaactcttgtcaaggcaag
aattataacctgaaggttattctgccgggcttaaaagaagactcacagattttgaaaatt
agattactacctggtcaccctcgtcgattgaaagtgaagcctgattccgaaattttagtt
atagaaaatggaacagctttcccatttcaggtggaagttttagatgaatcaggcaacata
acagcacaaccaaaattaattgttcattgtaagttttcaggtgctccaaaccttccagtc
tatgttgtagattgcagtagttccggaaccagtattttaacaggatctgcaattcaagtt
cagaatattaaaaaagaccagacgcttaaagcaagaattgaaatacctagttgtaaagat
gtggcacctgtggagaagactattaagttgcttcccagtagccatgttgcaagactacaa
atattcagtgtagaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattgg
atagcaggcgatgttatgcataatcttatttttcaaatgtatgatgaaggtgaaagagaa
atcaatataacatcagctttagcagaaaaaattaaagttaattggactcctgagattaac
aaagaacacttgctacagggtctacttcctgatgtacaagtaccaacatctgtaaaagat
atgcgctattgccaggtttcgttccaagatgatcatgtgtctttggaaagtgcatttaca
gtaagaccacttcctgatgaacctaaacatttaaaatgtgagttaaaaggaggaaaaaca
gtacagatgggccaagaacttcaaggagaagtagttataataattacggatcagtacgga
aatcagattcaagcattttcaccaagttctttatctgctttgtcagttgctggagttgga
cttgatagctcaaatttgaaaacaacctttcaggaaaacacacagagtataactgtaaga
ggcatcagatttattccaggtcctcctggaaataaggatctttgttttacttggcgtgag
ttttctgactttattcgggtgcaactaacttctggaccacctgctaaacttctctttata
gactggccagaactaaaggagtccattccagtgattaatggaagagatttacagaaccct
attattgttcaactttgtgatcagtgggataatccagcaccggtaccacatgttaaaata
agtcttacaaaagctagcaatttaaagctcacgccttcaaaccaacagcataaaacagat
gagaagggcagggctaatttgggagtattcagtgtttttgcccctaggggagagcatact
gtgcaggttaaagccatctataataaaagtataatagaaggacctgtaattaaattaatg
attcttccagatccagaaaaacccgttcgtctcaatgttaaatatgacaaagatgcttcc
ttcttagctgggggtcttttcactgattttatgattagtgttatttctgaagatgacagt
attattaaaaatattaatccagcacgtatttccatgaaaatgtggaaactgtctaccagt
gggaaccgacccccagcaaatgcagaaacatttagttgtaataaaataaaagataatgac
aaggaagatggctgcttctatttcagggataaagtaattcctaataaagtggggacatat
tgtatccagtttggttttatgatggataaaacaaatattctcaacagtgaacagattata
gttgatgtcctgcctaatcaacctgtgaagttagtgcctaaaattaaaccacctacacca
gctgtttctaatgttcgctcagttgccagtaggaccttggtcagagatttacatctcggt
atcacggatgactacaataaccatactggaattgatttggttggcactatagtggccacc
attaaaggttctaatgaggaagatactgataccccactctttattgggaaagttagaaca
cttgaattcccctttgtgaatggttcagctgaaatcatgagtctggtgctagcagaaagt
agtcctggaagagatagtactgaatattttattatatttgagccccggctaccactttta
tcaagaactttagaaccatatatcttaccattcatgttttacaatgatgttaaaaagcag
caacaaatggcagcacttacaaaagaaaaggaccaattatctcagtctattattatgtat
aaaagtttatttgaagcgggccaacagcttcttaatgaaatgaaatgtcaatttgaagaa
gcaagattaaaagaggcccaattgcgaaatgaactaaaaatacataatattgacattcct
actacacagcaggtgccgcacattgaaacacttctgaaaagaaagctatcagaacaggaa
gaactaaagaaaaaacctagaagatcatgtactcttccaaactatactaaaggcagtgga
gatgtgttgggaaagattgcacatctagcacaaattgaagatgatagagctgcgatggtt
atttcttggcatctggcaagtgacatggactgtgtagtcaccctaaccactgatgctgca
cgtcgtatctatgatgaaacccaaggtcgtcagcaggtgttgccccttgattctatttat
aagaagacccttccagattggaaaagacctctacctcatttccgaaatggaaaattgtat
tttaaacccattggagatccagtctttgctagagacttgttaacatttccagataatata
gaacattgtgaaacagtatttggtatgctgttaggagacaccattattttggataatctg
gatgcagccaatcattatagaaaagaggttgttaaaattacacactgtcctacactgttg
accagagatggagatcgaattcgaagtaatggaaagtttgggggccttcagaataaagct
cctccaatggataaacttcggggaatggtatttggagctccagtaccaaaacagtgcctg
atcttaggggaacaaataggtatgttaaataagtacttaaatagcaatttctaa
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integrated database retrieval system
