Cebus imitator (Panamanian white-faced capuchin): 108315130
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Entry
108315130 CDS
T08783
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
cimi
Cebus imitator (Panamanian white-faced capuchin)
Pathway
cimi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cimi00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108315130 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cimi03000
]
108315130 (KDM2B)
04121 Ubiquitin system [BR:
cimi04121
]
108315130 (KDM2B)
03036 Chromosome and associated proteins [BR:
cimi03036
]
108315130 (KDM2B)
Enzymes [BR:
cimi01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
108315130 (KDM2B)
Transcription factors [BR:
cimi03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
108315130 (KDM2B)
Ubiquitin system [BR:
cimi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108315130 (KDM2B)
Chromosome and associated proteins [BR:
cimi03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
108315130 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
108315130 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
108315130
NCBI-ProteinID:
XP_017399751
Ensembl:
ENSCCAG00000030939
LinkDB
All DBs
Position
Unknown
AA seq
1339 aa
AA seq
DB search
MAGLQMGGSAEDHPPRKRHAAAKQKKKKYIYTKCFEFESATQRPIDRQRYDENEDLSDVE
EIVSVRGFNLEEKLRSQLYQGDFVHAMEGKDFNYEYVQREALRVPLIFREKDGLGIKMPD
PDFTVRDVKLLVGSRRLVDVMDVNTQKGTEMSMSQFVRYYETPEAQRDKLYNVISLEFSH
TKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQTEATNAIAEMKYPKVKKYCLMSVKGCFTD
FHIDFGGTSVWYHVFRGGKIFWLIPPTLHNLALYEEWVLSGKQSDIFLGDRVERCQRIEL
KQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDRTRVQPKFRYPFYY
EMCWYVLERYVYCVTQRSHLTQEYQRESMLIDAPRKPSIDGFSSDSWLEMEEEACDQQPQ
EEEEKDEEGEGRDRTPKPPTEGSASPTSTPSEDQEAPGKKPKAPALRFLKRTLSNESEES
VKSTTLPVDYPKTPTGSPAAEAAAKWTHLTEFELKGLKALVEKLESLPENKKCVPEGIED
PQALLEGVKNVLKEHADDDPSLAITGVPVVTWPKKTPKNRAVGRPKGKLGPTSAVKLAAN
RTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTA
VCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPGCLKIKESEGVVNDELPNCWECP
KCNHAGKTGKAYKQKRGPGFKYASNLPGSLLKEQKMNRDNKEGQEPAKRRSECEEAPRRR
SDEHPKKAPPDGVLRRKSDDVHLRKKRKYEKPQELSGRKRASSLQTSPGSSSHLSPRPPL
GSSLSPWWRSSLTYFQQQLKPGKEDKLFRKKRRSWKNAEDRMALANKPLRRFKQEPEDDL
PEAPPKTRESDHSRSSSPTAGPSTEGAEGPEEKKKVKIRRKRRLPNKELSRELSKELNHE
IQRTESSLANENQQPIKSEPESEGEEPRRPPGVCERPHRFSKGLNGTPRELRHQLGPGLR
SPPRVISRPPPSVSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMHREVWMAVFSYL
SHQDLCVCMRVCRTWNRWCCDKRLWTRIDLNHCKSITPLMLSGIIRRQPVSLDLSWTNIS
KKQLSWLINRLPGLRDLVLSGCSWIAVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSP
PTDNRPGQMDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLHLSYCNHVTDQSIN
LLTAVGTTTRDSLTEINLSDCNKVTDQCLSFFKRCGNICHIDLRYCKQVTKEGCEQFIAE
MSVSVQFGQVEEKLLQKLS
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtctgcaaatggggggatctgcagaggatcaccccccacgaaaaagacatgca
gcagcaaaacaaaaaaagaaaaaatatatatatacaaaatgctttgaatttgagtcggcc
acacagcgcccgattgaccgccagcgatacgacgagaacgaggacttgtcggacgtggag
gagatcgtcagcgtccgcggcttcaacctggaggagaagcttcgcagtcagctgtaccag
ggggacttcgtgcacgccatggagggcaaagatttcaactatgagtacgtacagagagaa
gctctcagggttcccctgatatttcgagaaaaggatggactgggaattaagatgcctgac
cctgatttcacagtccgagacgtcaaactcctagtggggagccgacggcttgtggacgtg
atggatgtgaacacccagaagggcacggagatgagcatgtcccagtttgtgcgatactac
gagacgcccgaggcccagcgggacaagctgtacaacgtcatcagtctggagttcagccac
accaagctggagcacttggtcaagcgtccgaccgtggtagacctagtggactgggtggac
aacatgtggccccagcatctgaaggaaaagcagacagaagccacgaacgccattgcagag
atgaagtacccgaaagtaaagaagtactgtctgatgagtgtgaaaggttgtttcactgac
ttccacatcgactttggaggcacttccgtttggtaccacgttttccgaggtgggaagatt
ttttggctgattcctccaacgctgcacaatttggcgctgtatgaggagtgggtgctgtca
ggcaaacagagtgacatctttctgggagaccgtgtggaacgatgccaaagaattgagctg
aaacagggctacacatttttcatcccttccggttggatccatgccgtctacacccctgta
gactcattggtcttcggcggaaacatcctgcatagctttaacgtgcccatgcagctgcgg
atctacgagattgaggacagaacacgggtgcagccaaaattccgttaccccttctactat
gagatgtgctggtatgtcctggagagatacgtgtactgtgtgacccagcgctcccacctc
actcaggaataccagagggagtcgatgcttattgatgccccgaggaagcccagcatagac
ggtttctcttcggattcctggctggagatggaggaggaggcctgtgatcagcagcctcag
gaggaggaggagaaggatgaggagggcgagggcagagacaggacgcccaagccacccacc
gagggctctgcctcacccaccagcacaccctctgaggaccaggaggcccccgggaagaag
cccaaagcgcctgccctgcggttcctcaaaaggactttgtccaacgagtcagaggagagt
gtcaagtccaccacgctgcccgtggactaccccaagacgcccactggctctcctgctgcg
gaggctgctgccaaatggacccatctcaccgagtttgaactgaagggcctgaaagctctg
gtggagaaactggaatcccttccagagaacaagaagtgtgtccctgagggcatcgaggac
ccccaggcactcctggagggtgtgaagaatgttctgaaggagcatgcagatgatgaccct
agtctggccatcactggggtccctgtggtgacttggccaaagaagactccaaagaaccgg
gctgtgggtcggcccaaggggaagctgggcccgacctccgcggtgaagttggccgccaac
cggacaactgcaggagctcggcgacgccggacgcgatgccgcaagtgcgaggcctgcctg
cggaccgagtgcggagagtgccacttctgcaaggacatgaagaagttcgggggccccggg
cgcatgaagcagagctgcatcatgcggcagtgcatcgcgccagtgctgccccacaccgcc
gtgtgcctcgtgtgtggcgaggcggggaaggaagacacggtggaagaagaggaaggcaag
tttaacctcatgctcatggagtgctccatctgcaatgaaatcatccaccccggatgcctt
aagattaaggagtcagagggtgtggtcaacgatgagcttccaaactgctgggagtgtccg
aagtgtaaccatgccggcaagaccgggaaagcctacaagcaaaagcgtggccctggcttt
aagtacgcctccaacctgcccggctccctgctcaaggagcagaagatgaaccgggacaac
aaggaagggcaggagcctgccaagcggaggagtgagtgtgaggaggcaccccggcgcagg
tcggacgagcaccccaagaaggcgcccccagacggcgtcctgcgaaggaagtctgacgat
gtgcacctgaggaagaagcggaaatacgagaagccccaggagctgagtggacgcaagcgg
gcctcatcgcttcaaacgtcccccggttcctcctctcacctctcgccgaggccccctcta
ggcagcagcctcagcccctggtggagatccagtctcacttacttccagcagcagcttaaa
cctggcaaagaagataagcttttcaggaaaaagcggcggtcctggaagaacgcggaggac
cgcatggcactggccaacaagcccctccggcgcttcaagcaagaacccgaggacgatctg
cctgaggcaccccccaagaccagggagagcgaccactcccgctccagctcgcccactgcg
ggacccagcactgagggggctgagggcccagaggagaagaagaaggtgaagatacgccgg
aagcggcggctccccaacaaggagctcagcagggagctgagcaaggagctcaaccacgag
atccagagaacggagagcagcctggccaacgagaaccagcagcccatcaagtcagagcct
gagagtgagggcgaggagcccaggcggcccccgggtgtctgcgagcgcccccaccgcttc
agcaaggggctcaacggcaccccccgggagctgcggcaccagttggggcctggcctgcgc
agcccgccccgagtcatctcccggcccccgccctctgtgtccccgcccaagtgtatccag
atggagcgccatgtgatccggccaccccccatcagccccccgcctgactcactgcccctg
gatgacggggcagcccacgtcatgcacagggaggtgtggatggccgtcttcagctacctc
agccaccaagacctgtgtgtctgcatgcgggtctgcaggacctggaaccgctggtgctgt
gataagcggttgtggacccgcattgacctgaaccactgcaagtctatcacacccctgatg
ctgagcggcatcatccggcgacagcccgtctccctcgacctcagctggaccaatatctcc
aagaagcagctgagctggctcatcaaccggctgcctgggctccgggacttggtgctgtcg
ggctgctcatggatcgcagtctctgccctttgcagctccagttgtccactgcttcggacc
ctggatgttcagtgggtagagggactgaaggatgcccagatgcgggatctcctgtccccg
cccacagataacaggccaggtcagatggacaatcggagcaagctccggaacatcgtggag
ttgcgcctggcaggcctggacatcacggacgcctccctgcggctcatcatccgccacatg
cccctgctctctaagctccatctcagttactgtaaccacgtcaccgaccagtccatcaac
ctgctcaccgctgtcggcaccaccacccgagactccttaaccgagatcaacctgtctgac
tgcaataaggtcactgatcagtgcctgtccttcttcaaacgctgtggaaacatctgtcat
attgacctgaggtactgcaagcaagtcaccaaggaaggctgtgagcagttcatagccgag
atgtctgtgagtgtccagtttgggcaagtggaagaaaaactcctgcaaaaactgagttag
DBGET
integrated database retrieval system
