Cebus imitator (Panamanian white-faced capuchin): 108317669
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Entry
108317669 CDS
T08783
Symbol
DDX58
Name
(RefSeq) antiviral innate immune response receptor RIG-I isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
cimi
Cebus imitator (Panamanian white-faced capuchin)
Pathway
cimi04064
NF-kappa B signaling pathway
cimi04622
RIG-I-like receptor signaling pathway
cimi04623
Cytosolic DNA-sensing pathway
cimi05160
Hepatitis C
cimi05161
Hepatitis B
cimi05162
Measles
cimi05164
Influenza A
cimi05168
Herpes simplex virus 1 infection
cimi05169
Epstein-Barr virus infection
cimi05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
cimi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
108317669 (DDX58)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
108317669 (DDX58)
04623 Cytosolic DNA-sensing pathway
108317669 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
108317669 (DDX58)
05160 Hepatitis C
108317669 (DDX58)
05171 Coronavirus disease - COVID-19
108317669 (DDX58)
05164 Influenza A
108317669 (DDX58)
05162 Measles
108317669 (DDX58)
05168 Herpes simplex virus 1 infection
108317669 (DDX58)
05169 Epstein-Barr virus infection
108317669 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cimi04054
]
108317669 (DDX58)
Enzymes [BR:
cimi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108317669 (DDX58)
Pattern recognition receptors [BR:
cimi04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
108317669 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_22
AAA_25
AAA_6
PNMA
Motif
Other DBs
NCBI-GeneID:
108317669
NCBI-ProteinID:
XP_017403803
Ensembl:
ENSCCAG00000036752
LinkDB
All DBs
Position
Unknown
AA seq
925 aa
AA seq
DB search
MTFEQRRSLRAFRDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKI
LLDLQEEGWFRGFLDALDHAGYSGLYEAIESWDFQKIEKLEEYRLLLKRLQPEFKSRIIP
TDILPDLSECLINQECEEITQICSTKGMMAGAEKLVECLLRSDKENWPKTLKFALEKERN
QFSELWIIEKGIKDVETEDLEEKMETSDIQIFYQEDPECQNLSENSCLPSEVSDTDLYSP
FKTRSYQLELAVPAKKGKNTIICAPTGCGKTFVALLICEHHLKKFPQGQKGKVVFFANQI
PVYEQQKSVFSEYFERLGYRVTGISGATAENVPVKQIVENNDIIVLTPQILVNNLKNGTI
PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKDT
GEALDYICKLCASLDASVIATVQDNLEELEQVVYKPQKFFRKVESRVSDKFKCIIAQLMR
ETESLAKRICKDFENLSKIQNREFGTQKYEQWIVTVQKACMVLQMPDKEEESRICKALFL
YTSHLRKYNDALIISEDARMKDALQYLKDFFSNVRAARFDETEQDLTQRFEEKLQELESV
SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNSKLSFLKPGI
LTGRSKTNQNTGMTLPAQKCILDSFKAHGDHNILIATSVADEGIDIAQCNLVILYEYVGN
VIKMIQTRGRGRARGSKCFLLTSSAAVIEKENINMYKEKMMNDSILCLQKWDEAVFKEKI
LHIQIDEKFIRDSQEKTKPVPDKENKKLLCRKCKAFACYTADIRVIEESHYTVLGDAFKA
CFVSRPHPKPIQFSNFYKRAKIFCARQDCSHDWGIHVKYKTFEIPVIKIESFVVEDIATG
VQTLYSKWKDFHFEKIPFDAAEMSK
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcgagcagcggcgcagcctgcgcgccttccgcgattacatccggaagaccctg
gaccctacctacatcctgagctacatggccccctggtttagggaggaagaggtgcagtac
attcaggctgagaaaaacaacaagggcccaatggaggccgccacactttttctcaagatc
ctgttggacctccaggaggaaggctggttccgtggctttttggatgctctagaccacgca
ggttattctggactttatgaagccattgaaagttgggatttccaaaaaattgaaaagttg
gaggagtatagattacttttaaaacgtttacaaccagaatttaaaagtagaattattcca
acagatatccttcctgatctatctgaatgtttaattaatcaggagtgtgaagaaattaca
cagatttgctccactaagggaatgatggcaggtgcagagaaattggtggaatgccttctc
agatcagacaaggagaactggcccaaaactttaaaatttgctttggaaaaagaaaggaac
cagttcagtgagctgtggattatagagaaaggtataaaagatgtggaaacagaagatctt
gaggagaagatggaaacttctgacatacagattttctaccaagaagatccagaatgccag
aaccttagtgagaattcatgtctgccttcagaagtgtctgatacagacttgtacagccca
tttaaaacaagaagttaccaattagagcttgctgtgcctgccaagaaaggaaaaaacaca
ataatatgtgctcctacaggttgtggaaaaacctttgttgcactccttatatgtgaacat
catcttaaaaaattcccacaaggacaaaaggggaaagttgtcttttttgctaatcagatc
ccagtgtatgaacagcagaaatctgtattctcagaatactttgaaagacttgggtataga
gttacaggcatttctggagcaacagctgagaatgtcccagtgaaacagattgttgagaac
aacgacatcatcgttttaactccacagattcttgtgaacaaccttaaaaatggaacgatt
ccatcactgtccatctttactttgatgatatttgatgaatgccacaacactagtaaacaa
catccatacaatatgatcatgttcaattatctagatcagaaacttggaggatcttcaggc
ccactgccccaggtcatagggctgactgcctcggttggtgttggggatgccaaagacaca
ggtgaagctttggattatatctgcaaactgtgtgcttctcttgatgcgtcagtgatagca
acagtccaagacaacctggaggaactggagcaggttgtttataagccccagaagtttttc
aggaaagtggaatcacgggttagcgacaaatttaaatgcatcatagctcagctgatgagg
gagacagagagtctggcaaagagaatctgcaaagacttcgaaaatttatctaaaattcaa
aatagggaatttggaacacaaaaatatgaacaatggattgttacagttcagaaagcatgc
atggtgttgcagatgccagacaaagaggaagagagcaggatttgtaaagccctgtttttg
tacacttcacatttgcggaaatataatgatgccctcattattagtgaggacgcacgaatg
aaggacgctctgcaatacttgaaagacttcttcagcaatgtccgggcagcaagattcgat
gagactgaacaagatcttactcagagatttgaagaaaagctgcaggaactagaaagtgtt
tccagggatcccagcaatgagaaccctaaactcgaagacctctgcttcatcttacaagaa
gagtaccacttaaacccagagacaataacaattctctttgtgaaaaccagagcacttgtg
gatgctttaaaaaattggattgaaggaaattccaaactcagttttctaaaacctggcata
ttgactggacgtagcaaaacaaatcagaacacaggaatgactctcccagcacagaagtgt
atattggattcatttaaagcccatggagatcacaatattctgattgccacctcagttgct
gatgaaggcattgacattgctcagtgcaatcttgtcatcctgtatgagtatgtgggtaat
gtcatcaaaatgatccaaactagaggcagaggaagagcaagaggtagcaagtgcttcctt
ctcactagtagtgctgctgtaattgaaaaagagaacataaatatgtacaaagaaaaaatg
atgaatgactccattttatgccttcagaaatgggatgaagcagtatttaaggaaaagatt
ctgcatatacagattgatgaaaaattcatcagagatagtcaagaaaaaacaaaacctgta
cctgataaggaaaataaaaagctgctttgcagaaagtgcaaagccttcgcatgttacaca
gctgacataagagtgatagaggaatcccattacactgtgcttggagatgcgtttaaggca
tgctttgtgagtagaccacatcctaaaccaatacagttttcaaatttttataaaagagcg
aagatattctgtgcccgacaggactgcagccatgactggggaatccatgtgaagtacaag
acatttgagattccagttataaaaattgaaagttttgtggtggaggatattgcaactgga
gttcagacactgtactcaaagtggaaggactttcattttgagaagataccatttgatgca
gcagaaatgtccaaatga
DBGET
integrated database retrieval system
