Ciona intestinalis (yellow sea squirt): 100169882
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Entry
100169882 CDS
T01056
Symbol
ci-irf-like-2
Name
(RefSeq) interferon regulatory factor like protein
KO
K09446
interferon regulatory factor 5
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
100169882 (ci-irf-like-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
100169882 (ci-irf-like-2)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
100169882 (ci-irf-like-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
CCDC22_CC
Motif
Other DBs
NCBI-GeneID:
100169882
NCBI-ProteinID:
NP_001122338
Ensembl:
ENSCING00000005877
UniProt:
Q4H3B7
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All DBs
Position
14:2079240..2085309
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AA seq
530 aa
AA seq
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MTDDNEFKLPLRHWLVKKIEESAFDGLEWVNREEKTFKIPWTQKKYPNWEKHCEIFKAWA
KHRGSTNLGDPFDFKKLKGNFRCALNKSDDFEEIKERNVSDQQTGNYKIYRLLDKSEVTE
KRAQRKRSTAGSSGSNKPPAKQHKRSYTPDTSGWPGGSSVSVKSEYKQELEQKINSDIEQ
QLSNSMSSSQMDHADQYESGSIFSESINQFHQTISMPSESCSTNLTLLNNFPTNRSVIQQ
NVSEQISFQNFSNILSPEHVILASPEAAPVDQLYEQPPSFIRSVHPAEEIAQSLPTFETF
LQGFNLSREDMLMYKVTLKYNGMVVKSEKLSLAKGVRFMFGSPLLQKNVVEAFRSGEREL
VDLQTWEFPEQQMLSSNSANIDSILKSTDLGIVLQAQQNGLTAKRLCQSQIFYFDQSNQG
GHSVKLERKVAIEVLSHAKWVRSLLEQQRGSNTISPNEGSVKLVIGTKPSSIRSVGLVSL
TIQSACADILIKQFSDNDNPSVLASNESSLDVIIRMLDQWAVDPDSNFTP
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgacagatgacaatgagtttaaactgcccttacgacactggcttgtcaaaaagattgag
gaaagtgcatttgacgggctagagtgggtgaacagggaagaaaaaacgttcaagatacca
tggacccaaaagaaatacccaaactgggaaaagcattgcgaaatattcaaagcgtgggca
aaacacagaggcagcacgaatctaggagatccttttgactttaaaaagctgaaaggtaat
tttcgttgcgctttgaacaaatctgatgattttgaagaaataaaggaaagaaatgtgtcg
gatcaacagactgggaattataaaatataccgattacttgataaatcagaagttacagaa
aaaagagcacaaagaaagcgctcaactgctggatcgtctggaagtaataaaccacctgct
aagcaacacaaaagaagttatacacccgatacatcagggtggcctggtggaagtagcgtt
tctgtaaaatctgagtacaaacaagaattggagcaaaaaataaattctgatattgagcag
caattaagcaattccatgtcatcttcacaaatggatcatgctgaccagtatgaaagtgga
agcatctttagtgaaagcatcaatcaattccaccaaacaatatccatgccaagtgaaagc
tgctccacaaatttaacattgttaaataactttccaacaaacagaagcgtaatacaacag
aatgttagtgaacagataagtttccagaatttcagtaacatcctttcaccagaacacgtc
atactggccagccctgaagcagcacctgttgatcaattgtatgagcagccaccatctttt
attagaagtgtccatccagcagaagaaatagcccaatcattaccaacatttgaaactttc
ctgcaaggatttaacttatctcgtgaagacatgctcatgtacaaggtgacactcaagtat
aatgggatggtggtaaagtcagaaaagctgtcattagccaaaggtgttcgattcatgttt
gggagtcctttgctgcagaaaaacgttgttgaagcttttagatcgggtgaaagggaactg
gtagatttgcagacttgggaatttcctgaacagcaaatgctttcttcaaactcggccaac
atagatagcatcttaaagtccactgatcttgggatagtgttacaagctcagcaaaatgga
cttactgcaaaacgtctttgccaaagtcagatattttactttgatcaatcaaatcaaggc
ggccattcagtaaaactagagcggaaagtggctatagaggttttatcccatgcaaagtgg
gtccggtcattactggaacaacaacggggttcaaatacaatttctccaaacgagggttca
gtgaaattggtgatcggaaccaaaccttcatctataagatcagttggccttgttagtctc
accattcaatcagcatgcgctgatattttaattaaacaattttcagataatgacaaccca
tcagtgcttgctagcaatgaatcttcattggatgtgattattagaatgctggaccagtgg
gcagttgacccagacagcaattttacaccatag
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