Ciona intestinalis (yellow sea squirt): 100175824
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Entry
100175824 CDS
T01056
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100175824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100175824
Spliceosome [BR:
cin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100175824
Complex C
U5 SnRNP specific factors
100175824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
GLE1
Motif
Other DBs
NCBI-GeneID:
100175824
NCBI-ProteinID:
XP_002129683
Ensembl:
ENSCING00000009372
UniProt:
F6WXT4
LinkDB
All DBs
Position
Unknown
AA seq
973 aa
AA seq
DB search
MDSDMYDEFGNYIGPELDSDGEDEVDDVSDEGSEEEEEEEREEMEQDTHVTGTEVVLHED
KKYYPSHEEVYGPTVETIVEEEDAQPLTEPIIAPIKRKKFALVEQELPNTTYDMEYLADM
MDSPELIRNISIIGHLHHGKTNFVDCLMEQTHFDIAKHEEKDLRYTDTLLTEQERGLSIK
AQPTTLILPDTKGKSYLFNIMDSPGHVNFSDEVTAAMRLSDGVVLFIDASEGVMLNTEQL
LKHALQERLSVTICINKIDRLILELKLPPADAYFKLRHIVDEVNNLLRTYSDTENIPNVS
PLNGNVCFASSQYAFCFTLNSFANLYVKQFGNEVDPKQFARRLWGDVYFNQKTRRFSKKP
PHTNAQRSFIEFVLEPLYKIFSQVVGDADSTLPRVLDELGVYLSKEEMKMNIRPLLRLVC
SRFMGNFSGFVEMCVEHIPSANNAAKNKVMHTYTGPQDDTELVQAMYTCDPDGPLMVHTC
KMYSTEDGVSFRVFGRVISGTVRAGDMVKVLGENYTLDDEEDSRLLMMGRLWISEARYTV
EVNRVPAGNWVLMEGVDEPIVKTSTITQARGNEEAHIFKPLKFNTSSVVKIAVEPVNPSE
LPKMLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRRMYAEIDIKVADPV
VAFCETVVDTSSLKCFAETPNRKNKLTMIAEPLEKGLAEDIEHEVVQIGWNRKRLGEFFQ
TKYDWDLLAARSIWAFGPDAAGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGSREGPL
CDEPIRNVKFKILDAVIANEPLHRGGGQIIPTSRRVAYSAFLMATPRLMEPYMFVEVIAP
ADCVSAVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFGLS
VFHHWQIVPGDPLDKSVVIRPLEPQPATHLAREFMVKTRRRKGLSEDVSISKFFDDPMLL
ELARQDVMFNYPI
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggacagcgatatgtacgatgagttcggtaattacatcggacccgaacttgactctgac
ggtgaagatgaagttgatgacgtatcggatgaagggagtgaggaggaggaggaggaggag
agggaggaaatggagcaggatacgcatgtaactggtacagaagttgtgttgcacgaagat
aagaaatattatcccagccacgaggaagtgtacgggccaaccgtcgagacaatagtagaa
gaggaagatgcccaaccgctcaccgagccgatcatagctccgatcaaacggaagaagttt
gcgttggttgagcaagagctgccgaacacgacatacgacatggagtatctcgcagatatg
atggacagcccggaacttataagaaacatttcaatcattgggcatttgcaccatggaaaa
accaactttgttgattgtttgatggaacaaacacatttcgacattgctaaacatgaagaa
aaagatctgcgttacacggacaccttactaactgaacaagaacgcggcctcagcattaag
gcacagccaaccacactaatactgcccgatacaaaagggaaaagttatctgttcaatata
atggactcccctggtcatgttaacttctctgatgaggtgacggccgccatgcgattaagc
gatggggttgttttatttattgacgcatccgaaggtgtcatgttgaacaccgaacaactc
cttaaacatgcattgcaggagcgattatccgtgacgatctgcatcaacaaaatcgaccgt
ctcatactagaacttaagcttccccccgctgatgcttattttaaactccgccatatcgtg
gacgaagtaaataatttgttgagaacttacagcgataccgaaaacattccaaacgtttcc
cctttaaatggcaacgtatgtttcgcgagttcacaatacgcgttttgtttcacactcaac
tcgtttgcgaacctttacgtaaaacagtttggcaacgaggtcgacccaaaacaatttgct
cgaagattgtggggagacgtttactttaaccagaaaacgagaaggttttcgaagaaacct
ccgcacacgaacgcacagcgaagtttcattgagtttgttttggaacctttgtacaaaata
ttttcacaggttgttggggatgccgactcaacactgcctcgtgtgttggatgagcttggt
gtttatttatcgaaggaagaaatgaaaatgaatattcgacctttgcttcgacttgtgtgt
tccagattcatgggaaactttagtgggttcgttgagatgtgcgtcgaacacataccatcg
gccaacaacgctgctaagaacaaagtgatgcatacgtacacgggacctcaggatgatacg
gaacttgtgcaagccatgtatacgtgtgatcctgatggtcccctgatggtccacacatgc
aagatgtattcaactgaggatggggttagtttccgtgtgtttggacgtgtgattagcggt
acagtaagagcgggggacatggtgaaagtactcggggagaattacacgttggacgacgag
gaagattcgaggttgttgatgatggggagattgtggatatccgaggctaggtatacggtt
gaagtcaacagagttcctgcgggaaactgggtgttgatggaaggcgttgatgaacccata
gtgaagacgagcaccattacacaagctagaggaaatgaggaagctcatatattcaagcca
ctaaagtttaacacaagctccgtggtgaagattgcggtcgaacccgtcaacccatcagag
cttcccaagatgttggatgggctgaggaaagttaacaagagttatcccctgctaactaca
aaggtagaagagtcgggtgagcacgttgtacttgggaccggcgaactttaccttgactgt
gtaatgcacgatctacgacgaatgtacgccgagattgatatcaaagttgccgaccctgtg
gttgctttctgtgagacagtggtggatacttcatcgctgaaatgtttcgctgaaactccc
aacagaaagaacaaactaacgatgatcgccgaaccattggagaagggactggccgaggac
atcgaacacgaggtggtgcaaatcggatggaaccggaaacgcttgggtgaattcttccaa
accaagtacgactgggatttgcttgctgcgaggtcaatatgggcgtttggacccgatgcc
gcaggccccaacatattagtggatgacaccttgccatctgaggtcgacaaatcgttgctt
ggttcggttaaagatagcatcgtccaagggttccagtgggggtcaagggagggcccattg
tgtgatgaaccgatccggaacgtcaagttcaagatcctcgatgccgtgatcgcgaacgaa
cccttgcatagagggggagggcagatcattccaacctcgaggagggtcgcttactctgct
ttcctcatggcaacccctcgtctaatggaaccttacatgttcgttgaagtgatagcaccg
gctgattgcgtgtccgctgtgtatacggtccttgcgaggagaaggggtcatgtgacgcag
gacgcccccgtcccgggttcacccttatacaccatcaaagctttcattccagccattgat
tcgtttgggttcgaaacagatctacgaacacacacacaaggtcaagcattcgggttgtcc
gtgtttcaccattggcagattgtaccaggcgacccccttgacaagagcgtagttatccgg
cccctagaaccccagcctgcaacccacctcgctagggagttcatggtcaaaacgcgacgt
cgtaaaggattgagtgaagacgtttccatatcgaagttcttcgacgaccccatgttgctg
gaacttgctagacaagacgttatgtttaactacccaatataa
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