Ciona intestinalis (yellow sea squirt): 100177097
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Entry
100177097 CDS
T01056
Name
(RefSeq) interferon regulatory factor 6-like isoform X2
KO
K09446
interferon regulatory factor 5
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
100177097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
100177097
Transcription factors [BR:
cin03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
100177097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
100177097
NCBI-ProteinID:
XP_009861598
LinkDB
All DBs
Position
Unknown
AA seq
496 aa
AA seq
DB search
MVFKMGEPQKMAAFLRERCDSGMYNLRYLDAEQNLVFIPWPVAPRPTEELPPGFRIFQEW
AELSFIKRGLTIDQPEAPTTQKHRFRNALRKADGITHKGDRDGGRIYQFVDKKIRETPSS
RNMAAGTFHNDEFSPFNSAYPPQQANYQQQQQPPPPDTAGSPYFETGDQLSLQPNNLTQG
LPENWLDSEMDGVDIELDDLIPDMLDDGPIPINPSFTTQPDDTTNPHRITPQYHPVGIPL
PRRQVTDHTKLQIKVFYRGEDRFTHDVTNENGCRVYYGSCAPKLAQYLNPVQLLNQRHDT
EQLYGPDSIEQVQLTSDEQFMLTMKQKQSTDAILNNMGRGLVLILDNQNAGRSGGVPDVH
AIRLCQTRIFPYNGDDMARNEHEQQACGLPPVDSLKRMEWNKVFDGHEFYRRLSMATNSS
KFPCPSFSLSLGQRANGKQKSALFVMMTVRVQKAYQAIQAKLENSIECEVYISGTTSMDE
DALRLARKIKETLTLE
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttaaaatgggtgaaccacaaaagatggcggccttcctaagggagaggtgcgac
agtggaatgtacaaccttcgctaccttgatgcggaacaaaacctagtgtttataccttgg
cctgtagcaccaagacctaccgaggaattaccacctggattccggatatttcaggaatgg
gcggaactatcgttcataaagagagggctcaccatagatcaacctgaagccccaaccaca
caaaaacataggtttcgtaacgcattaaggaaagcagatggaatcacgcataagggggat
agagacggtgggaggatataccagtttgtagataaaaagattcgtgaaaccccaagcagc
agaaacatggctgcgggaactttccacaacgacgagttcagtccgttcaattcagcatac
ccgccccaacaagcaaactaccaacagcaacaacagccaccaccacctgacacagcagga
tcgccctactttgaaacaggggaccaactttcccttcaaccaaacaatctcacccagggt
ttacccgagaattggctcgacagtgagatggatggagtcgacatcgagttggacgaccta
atccccgacatgctggatgatgggccaataccaatcaacccaagcttcaccacacaaccc
gacgatactaccaacccacatcgcattacaccacaataccaccccgtcggtatccctcta
ccacgacgacaagtaacagatcacacgaaactacaaatcaaagttttctacagaggggag
gacaggttcacacacgatgtaacaaacgagaatggctgcagggtttactacggatcatgc
gcgccgaaacttgcacaatatttaaaccctgtccagttattgaaccaacgacacgacaca
gaacaactgtatgggccggattcaattgaacaagtgcagctaacatctgacgagcagttc
atgctgacaatgaaacagaagcaaagtacggatgccatacttaacaatatgggacgaggg
ctagtgttgatactggacaaccagaatgctgggcgcagtggtggggtacccgatgttcat
gctatcaggctgtgccagacccggatcttcccatacaatggagacgatatggcgaggaac
gaacatgagcaacaagcgtgtggtttgccaccagttgattcattgaagagaatggaatgg
aacaaagtattcgacgggcacgagttctatcggcgtttatcaatggccaccaactcgtcc
aagttcccgtgcccatctttcagtctttcccttggacaacgggcgaacgggaagcaaaag
tcagctttgttcgttatgatgacggtgcgcgtgcagaaggcttaccaggcgatacaagcc
aagttggaaaacagcatcgagtgcgaggtttatatatcgggcacaacatccatggatgaa
gacgccttacgtttggcgcggaagatcaaagaaactttaactttggagtaa
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integrated database retrieval system
