Ciona intestinalis (yellow sea squirt): 100177866
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Entry
100177866 CDS
T01056
Name
(RefSeq) sodium channel protein type 4 subunit alpha B-like isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cin04040
]
100177866
Ion channels [BR:
cin04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100177866
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
EF-hand_7
EF-hand_1
EF-hand_6
EF-hand_5
GPHH
Motif
Other DBs
NCBI-GeneID:
100177866
NCBI-ProteinID:
XP_009860070
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All DBs
Position
10:4319922..4348350
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AA seq
1991 aa
AA seq
DB search
MAMIRGRKIRVEKKERDFEIDRSSPNGKNCSAPLARLKQQRRLTIGYSKTPEKLLEPIED
PDPFYKDKKTFLVLNENRLIFRFSEEKSLYLFGRESRFRRHFINILVNKWFNGIVIVTIL
INCLVMMITGNDKPQWSEKYVEHIFTAIYTIEAAVKIVGRGFVLHRFSYLRDPWNWLDFI
VIIAAYVLVIISQTSAGDASKISSLTFLRAIRVLRVFKTVSVIPGLRMIVSALVASTKAL
KDAMLLSLLGFSMFSLVGFQFFRGTLHHKCVLRPPALLPYPPMCYETYGMNQNNSTTSLC
KMNEVYGKVILSNFGSQVMEEMTYLDDVFRASQNQTTYMFSSGTFEQLTNSSIATAVLPT
ESSLSFTTVNTEIWDSSNSTIEKGQCPVVQGLLPWKFQKSKIPKFNSTNYKFDWKTWTTN
PQKYLKNGVAYQLCGNLTGTLQCPAYTMCLKVGSNPNFGFTSFDNFPFAFLSVFRLSLQD
NWEELYLQVLETSGPVSVLFFLTMIFLGSYYLVNLILAVVASSYEGQRKSVENALEVEKV
ELLNEKEILTKRRNAARTVVAFKADDLQIQKKRFYHLRSWYKCGDIMIKWSCCEGSSIIC
RIRSKLHKFFTASAAEMITVTLVVLNTLFMAMEKEPKDDIFKNLLYYSNVVFTALFAIEM
ALKIFALSPYNYFKAAWNIFDFVVVTLSVFELIVSDKLPDGLSVLRTFRLIRLVRILKLA
KSWPTLSKLMQMIADSLSKVGYLTLVLLIVLVIFALAGMQTIGTQFFMDRTTGLPLRWHM
NSFPHAFLVVFRIQCGEWIQSMWSCMNSVRTEGSDGLIPVCLFIFIGVVFVGNLVVLNLF
LALLLNSFNSDALNAGGTNRSGARKFLKSLRNAGMKALPKLPAPIKRKRKVCPSSSRSTT
DSENSLEKTTPPAIHVRDAQNENGHNSNNISNYSRELTNGIRMNGKTLANATPDTPSKRT
ESMDTVEHNSDDWKPDIALPMTFLRNNNEYHHEVAANEQHSNGHKHTPPMPTKSCNGDLP
AKEHWTITVSRKCGLSWVKLKEKWCKFRMTMNMVVQHNIFESFIIFVILLSSVALVFDDV
TLPSKPKFKFILGVFDRIFTAIFVVEMLMKWVGFGLKKYFTNGWCLLDFFIVVVSLVSLS
LEIIAMQQQGKSNTDLSSLRVLRSLRAFRPLRAMSRFEGIKVVTDALFRSIPSILNVFVI
CLIFWLIFAIMGVNLFAGKMASCKWKATGEKVWHKTDYKNYPELAERYPPPPIDVVDIDS
CLCLANITGGKVHWTNLPINFDNVFIAYIALLQVATFKGWMPIMYAAVDAPTKVGLQPVR
DANIYNYFFFVAFIIFGAFFTLNLFISVVIDNFNQQKKKFEFAGTELFLTDTQKRVYNAM
KKLKAKLPKTLFPVPKAPWRERLYLFTTGDKFELGVMVITILNLLAMALEYEGMSPDYQS
VIKNINYGFVVVFTLEIVIRIIAMGKSYFYVPWNVFDFLLILASVLANAIPIIITHTNPN
TVSTVTSTPWLPMFRMVRVARILRVARVASGIRTLLFALMLSAPALFNVGSLLFLFVFIY
AIFGMNQFALVEKKGAINDILNFETFPNTFLLLFQMSTSAGWDGFMEPTLYVEGNPACVD
SKNGEKGTCMSTSFVGYFYFVSYLLVTFVIITNMYIAIILENFDLATKDNEEAVTADDFE
HFFDMWQRYDKNGNGKLTVTELSELLHNIDRPLRIRKPNKHHIANMRIPMDSEGEIYLLD
VASALTKKIIGTDGFTDETESELRSYYKRKCRGSLRSESRTKVTNTYDYVMNIDDSPNNV
IDRVIASPLTIEVSRNDGYVTNDIVTKADIHPTREMQVVLPAFHEQAKSAQIVTSPTSDV
TSYTLAATERPVNGLKIEDELKASRNRNSNCSRNPRTLNGEVGNATVNTLKTLCAISLRI
QLTENNASHHTVHDNSRHNSRFDRHEIFSPWLSMSRRVRSREGNSHGWLNSSPRSNKLPV
PHRDDPESNHC
NT seq
5976 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgattaggggacggaaaattcgggttgaaaagaaagaaagagactttgaaatc
gataggagcagtccaaacggaaagaattgttccgctcccttggctcgtttaaagcagcaa
cggcgtcttactattggttactcaaaaactcccgaaaaattattggagcccatcgaagac
cctgacccattttacaaagacaaaaagacttttcttgtcttgaatgaaaaccgtctcatc
tttcggttcagcgaggaaaaatctctgtacttgtttggacgtgaaagcagattcagacga
cattttatcaacatattggtcaacaagtggttcaatggcatcgtcatcgtcacaattctg
ataaactgcttagtcatgatgattacgggaaacgataaaccacaatggtccgaaaaatat
gtcgagcatatattcactgctatttacactatcgaagcggctgttaaaatcgtgggacgt
gggttcgttttgcatcgattcagttaccttagagacccttggaactggctggattttatc
gttatcattgccgcgtatgttttggtcattatatctcaaacttcagctggcgatgcctcc
aagatcagtagtcttacattcctgagggcgattcgggttctcagggtttttaaaacggtc
tcggtaataccaggtctccgtatgatcgtatcggctttagttgcttccacaaaggcactc
aaagatgcgatgttgttaagtctgctcggtttctcaatgttttccttggtcggatttcag
tttttccgcggtacattacaccacaaatgtgttctccgtccacctgccttactcccatat
ccacctatgtgttacgaaacgtatggaatgaaccaaaacaattctaccacgtctttatgc
aaaatgaatgaagtttacgggaaagtaatattgtctaattttgggtcacaagtgatggag
gaaatgacgtacttggatgacgtgtttcgggcttcgcaaaaccaaaccacctacatgttt
tcatccggtacatttgaacagctgaccaattcttcgatagctactgcagtgctgccgaca
gaatcgagcttaagtttcacaacggtcaacactgaaatatgggacagttcgaattctacc
atagaaaaaggccagtgtccagttgtacaaggacttctgccttggaagtttcaaaaatct
aaaattccaaagttcaactcaacaaattacaaattcgattggaaaacatggacaacaaat
cctcagaaatatttaaaaaacggagtggcgtaccaattatgcggcaaccttactggaaca
cttcaatgtccagcttacacaatgtgtttaaaagttggatcaaatccgaactttggtttc
acaagtttcgacaattttccgttcgctttcctttctgtattccgactttctttgcaagac
aattgggaggaattatatctacaagtactagaaacaagcggtccggtgtccgtcctcttt
ttcctcacaatgatcttccttggaagttattatcttgttaatctgatcctcgctgtggtc
gcatcatcatacgaagggcagaggaagagtgttgaaaatgctctcgaggtagaaaaagtg
gaactactcaatgaaaaagaaattttaacaaagcgacgaaacgcagcccgtacagtggtc
gcgttcaaagcagacgatttgcagattcagaaaaagcgattttaccatttgcgatcgtgg
tataaatgcggagatattatgataaagtggtcatgctgcgaaggtagtagcatcatctgc
cgcatacgcagcaaactgcacaagttcttcacggcctcagcggccgaaatgatcactgtt
acacttgtggttcttaacacgctttttatggcgatggaaaaagaaccgaaagacgatata
tttaaaaacttgctctactattcaaacgtggtgttcacggctttattcgccatcgaaatg
gctctcaaaatcttcgccctttcgccttacaattactttaaagcagcgtggaacatattt
gacttcgtagttgttacactgagtgtgtttgaattaattgtgtcggacaaattaccggat
ggtttatctgtactaagaacatttcgactcatacgtctggttcgaatactcaagctggca
aagtcgtggccaactctcagcaaactgatgcagatgattgccgactcgctcagtaaagtc
ggatatctcactcttgtcttactaatagtgttggttatctttgctttggcaggaatgcaa
actattggcacccagttctttatggacagaaccacgggcctgccgttgcgatggcatatg
aacagttttccacacgcgttcttggtcgtgtttcgaatccagtgtggagaatggatacag
agcatgtggagttgcatgaactctgttcgtacagaaggttcagatggtcttattcccgtg
tgtttgtttatatttatcggcgtcgtattcgttgggaacttggtggtgctgaatctgttt
cttgcgttgcttctcaattcgttcaacagcgacgctttaaatgccggaggtaccaatcgt
agcggggctcgaaaatttctcaaatcgttgcgaaatgctggaatgaaggcattacccaaa
ctacctgcaccaatcaaaagaaaacgaaaagtttgcccgagttccagcagaagtactaca
gactcggaaaactctttggaaaaaactactccaccagctatacatgtcagagatgctcag
aatgaaaatgggcataacagcaacaatatatcgaactatagtcgtgaactgaccaatggc
atccgaatgaatggcaagacattagcaaacgcaaccccagacactccatcaaaacgaact
gaatccatggacacagttgaacacaattctgacgactggaaacccgatatagcattaccg
atgacgttcttacgcaacaataatgaatatcaccatgaagtagccgcaaatgagcagcat
tcaaacggacataaacacactcccccaatgcccaccaagtcatgcaacggagatctacct
gcaaaggagcattggactattacagtatctcgcaagtgtgggctctcatgggtgaaactg
aaggaaaaatggtgcaaatttcgcatgacaatgaacatggtggtgcaacacaatatcttc
gaaagtttcattatctttgtcattcttctcagcagtgtagcgctggtattcgatgatgtc
acgttaccatcgaagcccaaatttaagtttattcttggcgtattcgatcggatatttaca
gcaatatttgtggttgagatgcttatgaagtgggttggcttcggattgaaaaaatatttc
actaatggatggtgtctgcttgacttctttatcgtagtggtatcattggtttctctgtcc
ttggagattattgcaatgcaacaacaaggaaagagcaacacagacctttcatcattaagg
gtgctgagaagtcttcgggcatttcgacctcttagagcaatgtctagatttgaagggatc
aaggttgtaactgatgctctgtttcgttcaattccatcaattctcaatgtatttgttatc
tgcttaattttctggcttatctttgctattatgggggtgaatctatttgccggaaaaatg
gcctcttgcaaatggaaagccactggagaaaaagtctggcataaaacagattacaaaaat
tacccagagctggcagagcgataccctccccctccaatagatgttgttgatatagatagt
tgtttatgtttggccaacattactgggggaaaagttcattggacaaatctgcccatcaac
tttgacaatgtttttattgcctacattgcactgctgcaggttgccacatttaagggttgg
atgccgatcatgtacgctgcagtagatgctccaactaaggttggattgcaacccgttaga
gatgcaaacatctacaactatttcttctttgttgctttcatcatatttggagctttcttt
actctcaatctttttatatcagtcgtgattgacaattttaatcaacagaagaagaagttt
gagtttgctggcacagaactctttcttactgatactcaaaaaagggtttacaatgccatg
aagaaactgaaagccaaacttcccaaaactttgttccctgtccccaaagctccatggagg
gaacgtctatacttgttcactactggggataagtttgaacttggagtgatggttattacc
attcttaacttactagctatggctctggaatatgaagggatgagtccagattaccagagc
gtgattaaaaacatcaactatggatttgttgttgtgtttaccctagagatcgtgatacga
ataatcgcgatgggaaaatcatatttctatgttccatggaatgtgtttgactttctcctc
attcttgcttctgtacttgcaaatgccattcccataattatcacccatacgaaccctaac
actgtgagtacggtgacctccacaccgtggctccctatgttccggatggtgcgtgtggcc
cgcatcctccgggtagctcgcgttgctagtggcatccggactttgctcttcgctctgatg
ctctctgctcctgctctttttaacgttggaagtcttcttttcctcttcgtttttatctac
gccatcttcgggatgaaccagtttgctcttgtggagaaaaagggagcaattaacgatatt
ttaaactttgaaacattcccaaatacttttttacttctattccagatgtcaacttctgct
ggttgggatggttttatggaaccaacattgtatgtggaaggcaatccagcttgtgtggat
agtaaaaatggagagaaaggaacctgcatgtcaacttcatttgttggatacttttacttt
gtcagctaccttcttgtgacttttgtgatcataacgaacatgtatatcgcgattatcctt
gaaaactttgatcttgctactaaagacaatgaagaagctgtaacagctgatgactttgag
catttctttgatatgtggcaacgttatgataaaaatggaaatggaaaactcactgtgacg
gagttaagtgaattacttcataatattgatcgaccgttgaggatacggaagccaaataag
caccatatcgcaaacatgagaatacccatggattcagaaggcgagatatacctgttagat
gtagcttctgctttaacaaagaagattataggtaccgacggtttcaccgacgagacagag
tctgaactccgatcttactacaagcgtaagtgtcgaggttcacttcgttcagaaagccgc
acgaaagtaaccaacacatacgattacgtaatgaacatcgacgactcccctaacaacgtc
attgatcgcgtcattgcttctccgctgacgattgaggtcagtcggaatgatggttacgtc
acaaacgacattgtgacaaaagcagacattcacccgacccgagaaatgcaggtcgtactc
cccgctttccatgagcaggctaaatctgctcaaattgtgacgtcacccacctctgacgtc
acgtcatacacccttgccgccaccgagcggccggtgaatgggttgaaaattgaagacgaa
ttgaaagcaagccgaaacagaaatagcaactgcagccgaaacccgaggacacttaacggg
gaagtaggtaacgctactgtcaatacactgaagactttatgcgcaatttcgctacgtatt
caactcacggaaaataatgcaagccaccacactgtacacgacaattccagacacaacagt
cgttttgaccgccacgagattttttcaccgtggctgtcaatgtcacggcgcgttcggtca
cgtgagggaaacagtcacggctggttgaactcaagcccccgctcgaataaactgcccgtg
ccgcatcgtgacgatcccgaatcaaatcattgttaa
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