Ciona intestinalis (yellow sea squirt): 100178466
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Entry
100178466 CDS
T01056
Name
(RefSeq) sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like isoform X2
KO
K06825
fibrillin 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04350
TGF-beta signaling pathway
cin04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
100178466
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100178466
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cin00536
]
100178466
Glycosaminoglycan binding proteins [BR:
cin00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100178466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXa_inhibition
EGF_CA
cEGF
Sushi
HYR
EGF
Ephrin_rec_like
EGF_3
Bact_surface_Ig-like
Motif
Other DBs
NCBI-GeneID:
100178466
NCBI-ProteinID:
XP_018669318
LinkDB
All DBs
Position
10:2023445..2039339
Genome browser
AA seq
1294 aa
AA seq
DB search
MNFVKEATKIVFLCLVISCHVATGYPCRDPGVIAHARRLFQRGNRLVQYICDVGYEAFGN
PLLSCTRGRWQDVKPVCVAPGCPPVEDLRNGVKVVKHNGAVLVHTCNEGYNIIGSSILYC
DGHRWNATRPVCQAHDSHPAPLAPENTMQPIVSNPVQNVPIAPRPIPANVRPTIAIKTTN
ITTSMPHVGMNPGVLPFPNQRSFNPNFMTQNNLHPNVRNRVPNPTVNPPEGYRRPNYNYM
PIYNRYNPYGPIYLPNTQQGRNLPNRNQAVMPRSERTKNEMFRNTNKVYGVSVANNMYNP
NSRGPYMHNSRNQQIHLPLTVQTEVNHNNSFPLRRDGHNQNPKRTRLMHLLNFNKTIQGT
NSHNDTTRQFPINEARRNVYSRNQNRNHQISSIKQTNSQPTLVQQRHLVCPRPMRIAGGY
LTTHPLPPDYSDDQYVYYIQYHCLSGLSLVGGDNISYCQSNGQWSGRTPKCAVLQKCDQG
FVQGDDGACTDANECNYNNGGCSHICHNFIGGFYCSCQRGYQLQQDQSCMDINECEVFNQ
ACMFDCVNIEGSFYCQCISGFISHDNITCADIDECAMNQHECMDTCVNTVGSYLCECFEG
RQLQVDGITCLDDGNDIDTNNIQNTIVTETIAECDGRSYINVQTNTCIPCPTNSVILEGS
EAIGIADCVCQPGYHGNPELLLPCSDFNECSDGNYGCSHLCVNTDGGAHCDCPTGYELDT
DGRLCTDTNECKESDVCENGVCSNTRGSYECICYHGYMAQTDHSSCIDINECEIENGGCS
DICKNYQGGFRCACPGSARLLSNGKSCQAVSHVCSPLMDPEHGHVLPARLCQGDYPITIG
RVCIYTCSHGYQVQGESRRECGVNGWSGEAPTCLVTEFCPPLTRPNNTEIIPKSCYQQPN
LQWQLCLFVCKSGFVLVGKLTMRCGPNQIWDGKPSYCVRKYPQAPTVPPLVPMIQCPPDI
DVVLMDGSSFANVTVLGPVSNMNIIEQENDGRASRNTFPAGTTIVHFTAFSVDRSQQASC
DMKVNVRDISAPVIQRCPGSISVISNEEYGNITWEEPLFSDNVRLHKVRMSRVPSGPITW
GTYRLTYIASDAAGNKAECSFSVTVRSSTRCNNINRPLNGRLDCRHWLKGKYCEVSCNAG
FTFDHTPAHVYVCTRGKWSPTNRLPNCLSQNSNLFTSSTTIRPTETVLTHRSHQLFNESS
LALPSIRKNCGPGSEAVHINNRIVRCKLCEAGYYKPNVRAVLSCIPCPRGFYQESRGMGY
CERCPNYETVQTNSSIPIMRGFASLAACSMLGGT
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgttaaagaagccaccaaaatcgtttttttatgtttagtaatttcctgccat
gttgctactggttatccatgtcgagacccaggtgtaattgcacatgctcggcgacttttt
cagaggggtaatagactcgttcaatatatatgtgatgttggttatgaggcatttggaaat
ccattactttcatgtacaaggggaagatggcaagatgtaaaacctgtttgtgttgcacct
ggttgtccacctgtagaagacttgaggaatggagttaaagttgttaaacataatggtgca
gtgttggtacatacatgcaatgaaggttacaacattataggaagctccattctgtactgt
gatggacatcggtggaatgctacaaggcctgtttgccaggctcatgactcacaccctgcc
cctcttgccccagaaaatacaatgcaaccaatagtgagcaatcctgtacaaaatgttcca
atagctcccaggcctattccagcaaatgttcggccaaccattgctattaaaaccaccaat
ataaccacctctatgcctcatgttggcatgaatcccggtgttttaccatttccaaatcaa
agaagtttcaatccgaattttatgactcaaaataatttgcatccaaatgtacggaataga
gttcccaatcctactgtaaatcctcccgagggttacaggagaccaaactataattatatg
cccatttacaaccgttacaatccatatggtccaatatatttgccaaacacacagcaagga
agaaatctacctaacagaaaccaagcagttatgccaaggagtgagagaactaaaaatgaa
atgttccgtaatacaaacaaggtatatggagtatctgttgctaacaatatgtacaaccca
aacagccgtggaccatacatgcacaattctcgtaatcaacaaattcaccttcctcttact
gtccaaactgaagtcaatcataacaattcatttcctttaagaagagacggtcataatcaa
aatccaaaaagaactcgattaatgcatttattaaattttaacaaaacaatacaaggtacc
aactctcacaatgacacaacaagacagtttccgataaatgaagctagacggaatgtttac
tcaaggaatcaaaacaggaaccaccaaatatccagcataaaacaaacgaattctcagccg
acattggtgcaacagagacacttggtttgtcctcgtcctatgagaattgctggcggttat
cttactacacatcctctgccacctgattactctgatgatcagtatgtctattacattcaa
tatcattgcttatctggtttgtccttggtgggtggagacaatattagttattgtcaatca
aatggccaatggagtggtagaacacccaagtgtgctgtgttacaaaaatgtgaccaagga
tttgtgcaaggagatgatggagcttgtactgacgccaatgaatgtaactataacaatggg
ggatgttctcatatttgtcacaacttcattgggggtttttattgtagttgccaacgtggt
taccagctgcagcaagaccaatcttgtatggatattaatgagtgcgaagtgtttaatcaa
gcttgtatgtttgattgtgttaatatagaaggatctttttattgtcaatgtattagtgga
ttcattagtcatgacaatattacttgtgcagacattgatgaatgtgctatgaaccaacat
gaatgcatggacacgtgcgtaaacacagtgggtagttatctatgtgaatgctttgaagga
agacaacttcaagtggatggaattacttgcttggatgatggcaatgatattgatacaaat
aacatacagaacactattgtcacagaaaccattgctgaatgtgatggtagatcttatata
aacgtgcagactaatacatgtattccttgtccaaccaactcagttattttggaaggctca
gaagcaataggcattgctgattgtgtctgtcaacctggttaccatggaaatcctgaactt
cttcttccttgttctgattttaatgagtgtagtgacggcaactatggttgttctcactta
tgtgtcaacacggatggaggggctcattgtgattgtccaactggatatgagttggatacg
gatgggaggctttgcacagatacaaatgaatgtaaagagagcgatgtctgtgagaatggt
gtatgttcaaacacaagaggaagctatgaatgcatatgttatcatggttacatggctcaa
acggatcactccagctgcattgatattaacgaatgtgaaatagaaaatggcggatgtagt
gatatttgcaaaaattatcagggtggttttcgttgtgcatgtccaggaagtgcaaggtta
ttaagtaatggaaaaagttgtcaagctgtcagtcatgtatgttcaccgcttatggatcct
gagcatggccacgttcttcctgcacggctttgtcaaggtgactatcccatcaccatcggc
cgtgtttgcatttacacatgctctcatggttaccaagtacaaggagaaagtagaagagaa
tgtggggtgaatggttggtcaggggaagctcctacttgcttagtaactgagttttgtcct
cctttgactcgaccaaacaacaccgagatcataccaaagtcttgttaccaacaaccgaac
ttacagtggcagctgtgcctgtttgtgtgtaagagtggatttgtacttgtgggaaaacta
accatgaggtgcggacccaaccagatatgggatgggaagccttcttactgtgtaaggaaa
tatccacaggctccaacagttccaccccttgtaccaatgatacaatgtccaccagatatt
gatgttgttttaatggatggaagctcatttgctaatgttacggtattgggtccagtttct
aacatgaacattattgagcaagaaaatgatggacgtgcatctcgtaacacctttcctgct
ggcacaacgattgtacactttactgcattctctgttgatcgaagccagcaagcatcatgc
gatatgaaagtaaatgttcgagatatatcagcacctgtaatacaaagatgcccaggttct
atttctgttatatcaaatgaagagtatggaaacataacatgggaggaaccattgttcagc
gacaatgttcgattacacaaagttcgaatgtcacgtgttccttccggaccaattacgtgg
ggaacatatcgtttgacgtatatagcaagtgatgcagctggaaacaaagccgaatgttct
ttttctgttactgttcgatcttctacaaggtgtaacaacataaaccggcctttaaatggt
cgattagattgtcggcattggttgaagggaaaatactgtgaagtatcctgtaatgcgggt
ttcacgtttgatcatacgccagctcatgtatatgtttgcacgcgaggaaaatggtccccc
accaatcgactaccaaattgtttaagccaaaactccaatttatttacatcatcaaccacc
atccgaccaacagagactgtactaacacacaggtcacatcaactcttcaatgaatcatct
ttggcattaccttcgataagaaaaaattgtggacctggaagtgaagcagttcacattaat
aatagaatagtcaggtgcaaactttgtgaagcaggatactacaaaccgaatgtacgtgca
gtgctctcttgtattccatgtccgcgtggtttttaccaggaatcgcgaggcatgggttat
tgtgaacgatgtccaaattatgaaactgtacaaaccaactcaagcattcctattatgcgt
ggttttgcctcgctagcggcgtgcagcatgttaggaggaacgtaa
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