Ciona intestinalis (yellow sea squirt): 100178491
Help
Entry
100178491 CDS
T01056
Name
(RefSeq) F-box/WD repeat-containing protein 7 isoform X1
KO
K10260
F-box and WD-40 domain protein 7
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
100178491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100178491
04121 Ubiquitin system [BR:
cin04121
]
100178491
Membrane trafficking [BR:
cin04131
]
Autophagy
Mitophagy
Other mitophagy associated proteins
100178491
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
100178491
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_IFT122_1st
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_2nd
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_TEP1_C
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_SCAP
Beta-prop_WDR36-Utp21_1st
F-box-like
DSE1_N
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
F-box
NBCH_WD40
Beta-prop_WDR41
ASA1
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
CFAP251_N
Beta-prop_DCAF12
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_ACSF4
Beta-prop_SPT8
TRM82_WD
DUF4508
WDR54
Beta-prop_Aladin
WD40_like
Motif
Other DBs
NCBI-GeneID:
100178491
NCBI-ProteinID:
XP_018673256
LinkDB
All DBs
Position
2
Genome browser
AA seq
630 aa
AA seq
DB search
MINEPEDVSFQKQLDELAIWFENWSHLQRCGVLKRLISISNFPQFQLLWTAVEPILHRDF
MYSASERFPSEQFTPISTEISRATRQRLTKNRMIQRFHRTKSAYIRTEEDVMSRNHLLPP
IESKPFHLPAVEAGIPSSFIRIPSLHHRRSLTTPDPHVDHDHRKPEANWMTAMHVRRHIL
ENPVVENASTCSSDSSCPNSDQLLEWYASWKGPERATFLRLALMKLDARQLYFLSSFLAV
RRHRDMLSLLPPNVAHHILSFLPPTDLISCAKVSKSWETLCRHNKIWRQKCDETPLHVRP
VATPSVGGWRSAYREDKLLKRNWREGICSELELTGHSGGVLCVVANDKMIVSGGKDATVR
VWSASSGRLKQTFTGHQKSVWCVAILTDKLVASGSYDRCVKIWRLGAKAECLRTLFGHLG
PIWCMVCKQRYLATGSQDRMIKLWDIHHCTLLRTLRGHTSAIFAMDADDCFNNLFSGSAD
KSIRVWEIATGQCIRVLWTGSATATMSVSFSHGLLASAAGGHVMLWEPISGRFVRSFHPH
KERIESVQLRITDSTATSGVLTTASKDGVITYWGIFGNEIPIRKLRGHKGQINCVTSGPT
RVVSASHDGTVRVWDFRESPFTPITPNAIF
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgatcaatgaaccagaggatgtttcgttccagaaacaactggatgaacttgcaatctgg
tttgagaattggtcacatttacagcgctgtggtgtattgaaacgacttatttcaatcagt
aactttcctcaatttcaattactatggaccgctgttgaaccaattctgcaccgagatttt
atgtattcagcatcagaaagatttccatcagaacaatttactccaatcagcaccgagata
agtcgagcgactcggcaacgtttgaccaaaaataggatgattcagcgatttcatcgaacg
aaaagtgcttacatcagaactgaggaagatgtgatgagtcgtaaccacctcttaccccct
attgaatcaaagcctttccatcttcctgcagtggaagcgggaattccatcttcctttatc
cgaatcccatctctacatcaccggaggagtctcacaacccctgatcctcatgtggatcat
gatcatcggaaaccggaagcgaactggatgacagccatgcatgtgcgtcgtcatatccta
gaaaatcctgttgtagaaaatgcaagtacatgtagttctgattcgtcttgcccaaattct
gaccaactattggagtggtatgcatcctggaaaggtccagaaagagcgacttttctacgc
cttgctttaatgaaacttgacgcccgacaactttattttctctcatctttccttgctgta
cgaagacatcgagatatgctctctctgctgccccctaatgtagcgcaccacattttatcc
ttcctaccaccgacagatctcataagttgtgccaaggtttccaagtcttgggaaacattg
tgccgacacaacaaaatctggcgccaaaaatgtgacgagacccctcttcatgttcgtcct
gttgcgacacctagtgttggtgggtggaggtctgcataccgggaagacaaactgctcaag
cggaactggcgtgaagggatatgcagtgaactggaactgacggggcatagtgggggtgtt
ctgtgtgttgttgcaaatgataagatgattgtcagtgggggtaaagatgcaactgtaagg
gtgtggagcgcctcaagtggcaggttaaagcaaacatttactggacaccagaaaagtgtt
tggtgcgttgcaattctaactgataaactggtagccagtggttcatatgacagatgcgtt
aagatatggcgtctgggagcaaaggcagaatgtctaagaactttatttgggcaccttggt
ccaatctggtgtatggtttgcaaacagaggtaccttgctactggatctcaggacagaatg
ataaagttgtgggatatacatcactgcacacttctgcgcaccctcaggggacatacctct
gcaatatttgcaatggatgcagacgattgcttcaacaatctattctctggttcagcagat
aagagcatccgggtttgggaaattgccactggacaatgcatcagagtgttatggacaggg
tcagccactgccacgatgtcggtcagtttcagtcacggtctactggcatcggctgccggc
ggtcacgtaatgttgtgggagccaatcagcggtcgattcgttcgctcgtttcatccacat
aaagaacggatcgaatcggtccagcttagaatcactgactcaacagcgacgtctggcgtc
cttactacagcatctaaagatggggtaatcacctactggggaatttttggaaatgagatt
ccaatccgcaaactacggggtcataaaggtcagatcaattgcgtcacatccggccccacc
cgcgtggtgtccgcgtcccatgacggtacagttagggtgtgggacttccgggaatccccc
tttacccccatcaccccaaacgccattttttaa
DBGET
integrated database retrieval system
