KEGG   Ciona intestinalis (yellow sea squirt): 100182416
Entry
100182416         CDS       T01056                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RNF123
  KO
K12169  Kip1 ubiquitination-promoting complex protein 1 [EC:2.3.2.27]
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cin04121]
    100182416
Enzymes [BR:cin01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     100182416
Ubiquitin system [BR:cin04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    100182416
  Multi subunit type E3
   KPC complex
    100182416
SSDB
Motif
Pfam: TPR_RNF123 zf-C3HC4_3 zf-RING_2 zf-C3HC4 zf-C3HC4_2 CYP38_PsbQ-like RING_XB3-XBAT31
Other DBs
NCBI-GeneID: 100182416
NCBI-ProteinID: XP_018667598
Ensembl: ENSCING00000009462 ENSCING00000009971
LinkDB
Position
5:2077120..2099725
AA seq 1078 aa
MGVAFNNIPTGPGIAYFPGLSLAFKEVAYCNFGHRPLKYPVAGYKTLQAPPPDSHEAEYL
THSLKSLNSIVNEKRYSELDQVTVHTMLAHIMQRLGPTLKSMYNVESYFLPFLLSLCDHN
SKDDDKFAQLHFILSCLWQYTEAREVRDCMNNVFEGALRRYRTSLVHVEFIEQRTYLNFV
LGLHLHTQTRRSLALHCSFDRQAEIPSLFHIKQVSKHREAGLSQLIPMVWGQDCDPKATY
ERGYEKLKEKMDDIKDLQREIMRLMLLDGNSSKQPKGYLLNGAFVKYFRKYLESLVSSTR
SEHTLVCPPIVLHSFMQRLCDVTKQLWDELSTTKANYVLSDEANIPVELFYTETVSYFDL
QRVGGLKSHLFQEHKDELAKEGVSVVRGRGSRRSTNDEAAWSEHSSILQLFHDEAASSSL
PTFARADDDSEIDSLNPVLRLARALLSQSNKMSGRERHVTVSRKRSLSEDGESSRYPSKA
QLMEITDGCILLYNNILHTHMDKIHSTRTKIVEYATALNDIETKMKKCSEKQHEEVRKSL
TQSHNVLLHHMTELCRSIAWLKASVYSPESQSNLWWLLQVCLRTAHNASDKGPLFTFMPE
FYLTAGARLYKCLREYFAPSQPFEKLPNMKPTLISFTLFLSNFHCDARLVNNDVKTMLAN
TITTFITYPLQLQAIEDMPTANLHSFVRNMLYAYDEDKPWTSVGHRILATLWRGSGFAMR
YDHPPYMTKVKKLLNREHDPYVPKQLLACVQELLLAEPVLAGKFVHSILEHLNWSFSEFI
GQLQEVQQQNAREWNNATGLLASLDAQALRQLRIVDMLFELSVSLMRVLELTIAVAPNVF
LDWEKNDTAEILLTALVQCVNQILSRVTTRKNLFDKIVSGRQPGLSSVQHYPLMTSTAGI
LLRMLKHDDPAMSKRATQALISDPGFSITSVEFLLNITGKSEVEVTSEARGPTVAYSRVK
ERKFVSLQEYEELMDGEVDTLRDVIINLRHATKAAEESTEEPMDEDSLCTICYANEANVA
FHPCKHTSCRMCIKFRLMSGGECFFCKETVECFYDIPAAADAGTLPLDGATASTSTKL
NT seq 3237 nt   +upstreamnt  +downstreamnt
atgggagtagcattcaacaacataccaacaggtcctggtattgcttacttccctggttta
agtcttgcatttaaagaggtggcgtattgcaactttggacatcgaccactaaaatatccc
gttgcaggatacaaaactttacaggccccacctccagattcccatgaagctgaatacctt
actcatagcttaaaatcattgaattcaattgtaaacgagaaacgatattcagagttggac
caggttactgttcatactatgctagctcatataatgcaaagacttggacctacactgaaa
tcaatgtacaatgttgagtcttattttcttccatttttactttccttgtgtgaccacaac
agtaaagatgatgacaaatttgcgcaactgcattttatactcagttgtttatggcaatat
actgaggcacgtgaggtaagggattgcatgaacaatgtgttcgaaggtgcgttacgtcga
tatcgtacatcacttgtacacgtggaattcattgaacaacggacttacctcaactttgtg
cttgggctccatctgcatactcaaactagaagaagtctcgcactgcattgctcatttgac
agacaagcagagattccatccctctttcatattaaacaggtttcaaaacatagggaagct
ggtttaagtcaacttataccaatggtttggggccaggattgtgatccaaaagcaacgtat
gagcgaggttatgaaaaactgaaggaaaaaatggatgatattaaagatttgcaaagagag
attatgaggttaatgttgctggatggtaactcaagcaaacaacctaagggttatttacta
aatggagcgttcgtgaaatactttcggaaatatttagaaagtctcgtctcttctactcgt
tctgaacatacattagtctgcccaccaatagtattgcattcatttatgcaaagactttgt
gatgtcacaaaacaactatgggatgaattgtccaccaccaaagcaaactacgtcttatct
gatgaggcaaatatacccgttgagttgttttatactgagacagtaagttactttgactta
cagagggttggaggattgaaatctcatttgtttcaagaacataaagatgaacttgcaaaa
gagggcgtgtctgttgtccgggggcgtggcagtcgtagatcgaccaatgacgaagcagca
tggagtgagcatagctccatcttacaattatttcacgatgaagcagcaagttcatcatta
cctacatttgcaagagcagatgatgattcggagattgattctttgaacccggttctccgt
cttgcgcgggcccttcttagtcagagcaacaaaatgtcgggtcgagaacgacacgttaca
gtcagtagaaagagatctctcagtgaagatggtgaaagttcacggtatccatctaaagca
caactaatggaaataacagatggttgcattctgctgtataacaacatacttcatacacat
atggataagatccattccacaagaacaaaaatagttgaatacgcaactgcactgaacgac
attgaaacaaaaatgaaaaaatgttcagaaaaacagcatgaagaagttcgaaaaagttta
acccagtcccacaatgtgttgctgcatcatatgactgagttatgtcggtctatagcttgg
ttgaaagcatctgtttattcaccggagtcacagagtaacttatggtggttgttacaagtt
tgtctacgcaccgcacataatgcttcggacaagggacctttatttactttcatgccagag
ttttatcttacagctggtgcaagattatacaaatgccttcgtgaatattttgcaccatct
caaccctttgaaaaacttccaaacatgaagccaacattaatctcattcactctcttcctc
agtaatttccattgtgatgcaaggcttgttaataatgatgtgaaaaccatgttagcaaat
acaatcaccacattcattacctacccactgcaattacaagcaattgaggatatgccaact
gcaaatttacattcgtttgtacgtaacatgttatatgcatatgatgaagacaaaccatgg
acaagtgtcggacatcggatactcgctactctatggaggggcagtggatttgccatgcga
tatgatcacccaccgtatatgactaaagtgaagaaacttttaaacagagaacacgatcca
tatgtcccaaaacaactgcttgcttgtgtacaagagctgctattggccgagccggttttg
gcgggaaaatttgtccacagtatccttgaacatttgaattggagtttctccgagttcatt
ggtcaactacaagaggtccagcaacaaaatgcacgggaatggaataatgcgacaggtctc
cttgcatcacttgatgcacaagcattacgtcaacttcgtatcgttgatatgttgtttgaa
ctctctgtctccctcatgcgggtgcttgaactcacaattgctgttgctccgaacgttttt
ctcgactgggagaaaaatgacacggccgagattttgttaactgcgctggtgcagtgtgtc
aaccagatactaagcagagtaactacacgtaaaaatctatttgataaaattgtgtcagga
agacaaccaggattaagcagtgtacaacattaccctttgatgacgtcaactgctggaatt
ctactacggatgttaaagcatgatgatcctgctatgtctaaaagagcaacacaagcgttg
ataagcgacccaggtttcagtataacgtccgtcgagttccttttaaacataacaggaaaa
tccgaagttgaggtgacgtcagaggccagaggtcccaccgttgcttacagcagagtcaaa
gaaagaaaattcgtatcattacaagaatatgaagaattaatggacggtgaagtagataca
cttcgtgatgtcataattaacttaagacatgcaacaaaagctgctgaagaatctactgag
gaaccgatggacgaagacagtttgtgtacaatatgttatgcaaatgaagcaaatgttgct
tttcatccgtgcaagcatacatcgtgcagaatgtgcatcaagttccgcttgatgagtggt
ggagaatgttttttctgtaaggaaactgtagaatgtttttatgatataccggcagctgcc
gatgctggtactcttccgcttgacggcgccactgcgtcaacttctacaaagctgtag

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