KEGG   Ciona intestinalis (yellow sea squirt): 100182620
Entry
100182620         CDS       T01056                                 
Name
(RefSeq) NHP2-like protein 1
  KO
K12845  U4/U6 small nuclear ribonucleoprotein SNU13
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03008  Ribosome biogenesis in eukaryotes
cin03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100182620
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    100182620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cin03041]
    100182620
   03009 Ribosome biogenesis [BR:cin03009]
    100182620
Spliceosome [BR:cin03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    100182620
Ribosome biogenesis [BR:cin03009]
 Eukaryotic type
  Sno RNPs
   Box C/D snoRNPs
    100182620
SSDB
Motif
Pfam: Ribosomal_L7Ae RNase_P_pop3 PELOTA_1
Other DBs
NCBI-GeneID: 100182620
NCBI-ProteinID: XP_002132097
Ensembl: ENSCING00000021075
UniProt: H2XLD8
LinkDB
Position
9:complement(4901472..4903444)
AA seq 127 aa
MDDEVNSKAYPLADAELTKTILDMIQQASNYKQLRKGANEATKTLNRGLSELIVLSADAE
PLEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIAASVTSCEGSQLKSQIDSLRG
RIEKLLV
NT seq 384 nt   +upstreamnt  +downstreamnt
atggatgacgaagtaaacagcaaggcttacccgctggcagatgctgagttgacgaaaacc
atccttgacatgatacagcaagcttcaaactataaacaactgaggaaaggagctaatgaa
gcaaccaagacattgaaccgtgggttgtccgaactcatcgtgttgtctgctgatgccgaa
cctttggaaatattgctacatctgcctctcctgtgtgaggataaaaatgttccgtacgtt
tttgtacgctccaagcaagcgctgggcagagcatgcggggtatcgcgacctgtgatagca
gcttctgtgacatcatgcgaaggttctcagttgaaatcgcaaatagattctcttcgtgga
aggattgaaaagttgctcgtttaa

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