KEGG   Ciona intestinalis (yellow sea squirt): 100184920
Entry
100184920         CDS       T01056                                 
Name
(RefSeq) intraflagellar transport protein 122 homolog
  KO
K19656  intraflagellar transport protein 122
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:cin03037]
    100184920
Cilium and associated proteins [BR:cin03037]
 Primary cilia and associated proteins
  Intraflagellar transport (IFT) complex A
   100184920
SSDB
Motif
Pfam: Beta-prop_IFT122_1st Beta-prop_IFT122_2nd Zn_ribbon_IFT122 WD40_WDHD1_1st Beta-prop_EML_2 WD40 WD40_CDC20-Fz Zn_ribbon_IFT122_C WD40_Prp19 ANAPC4_WD40 WDR55 TPR_GEMI5 Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd TPR_IF140-IFT172 NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_IFT140_1st PEP5_VPS11_N Beta-prop_NUP159_NUP214 TPR_IFT80_172 Beta-prop_IFT140_2nd
Other DBs
NCBI-GeneID: 100184920
NCBI-ProteinID: XP_026691357
Ensembl: ENSCING00000007399
LinkDB
Position
8:4362649..4374177
AA seq 1199 aa
MRTMPLWADQPQDKGQTPKCIYDLAFKPDGSQLLVASGSRILVYDPSDGTHSQTLRAHKD
TVYCLGYSRDGKRFASGAADKCVIIWTDKLAGILKYTHNEAIQCLAYNPVTPQLASCAIN
DFGLWAPEQKSVNKHKMSNRITCCSWTSDGQYLALGLFNGVISIRSKMGEDKIKIERPGG
SLCPIWKILWNQNKNNSNDVLTVCDWGQNLSFYHLNGKQIGKDTKLEFDPCALQFFDEGR
YLVVGGSNRKTSLYSKEGHFLGIVSDSNSGWVWSIACKPDGNVVVVGHQDGTITCHSLTF
STVHGLYRDCYAFRQLLTNVVVQRLNSDIMDVDLEEDDSSKITIKCNDIVKKISVYKDKL
AVQLSDRIVVYKMVTKDTTVTYKPVNKILKKFECNLLVVCSENIILCQESKLTCFSMDGE
KQREWLLEANIRYIKVIGGPAGREGMLLGLKNGQVLQIFVDNPFPIEMLKINSSIRCLDL
SMKRTKLAIISDNSTCHVYDIATKELLFEEVNANSVAWNTQNEEMLCYSGKGYLGIKAGS
FPAQQRRMNGFVVGYCGSRIFCLHVHAMRAVDVPQSAPMYQYLDRQLYNEAYQIACLGVT
DTDWYNLSQKALENLSFDVARKAFTRIRNLRYLELIQNIEDRQKRGENKTDLFMADIHAY
RSEFAEAAGYYKKAGHSQKAVDMYTDLRMFELAKEYVETSDPVEHKQLMAKQANWAKNTN
EPREAAKMYLAAGENLKALDIIGEHGWTDMLMEVARKLDKADREALTKCAFYLKRLQQYA
YCAEVYNKMGDKKAHILLHVETKNWDEAFSLVEKFPEFKDDVYVPHAKWLAENDKFEEAQ
KAFHKAGRITEALHVLEQLTENAVDECRFNDAGYYYWMLSMQCLDIAAEKTPKKAEMLKK
FKKYQKLAEIYYVYHSIQRYTDEPFTSHLPEALFNIARFLLHSISGSNPPRGVSKVATLY
ALAKQSRSLGAYKLARHAYEKLHALKLPLRFQDLIDLGSVTIRSKPYHDNEDLQPMCYRC
STTNPLLNAQGSSCINCHQPFVYSFSSFEVLPLVEFTLEEGIGDEEACRLIDSSIKQAKS
NEWKDTERDAQTLRMDEEEEEDPFTARLLTFEGGGDYLPVVVNRSVLRALPRREVLVRRW
APPLRFQYFKNLMPEVAVAMCDSCFQMFHADDYELMVLQKQCCPFCRKASDAHEDKPEM
NT seq 3600 nt   +upstreamnt  +downstreamnt
atgaggactatgccactttgggcggaccagccccaggacaaaggacagaccccgaaatgc
atatacgatcttgcatttaaacccgatggaagccagttactcgttgcatcaggtagtcgt
atactggtgtatgatccttctgatggaacacattcacaaactctacgagctcataaagat
acagtttattgtcttggatactctagagatggtaaaagatttgcctctggtgctgctgat
aagtgtgtcattatatggacagataaattggcaggaatactgaaatatacccacaatgaa
gcaatccagtgtcttgcatacaaccctgttacacctcagttggcatcatgtgcaataaat
gactttggtttgtgggctcctgagcaaaagtctgtgaataaacataagatgagcaacaga
attacatgttgcagttggacaagcgatggtcaatatcttgctcttggcctttttaacgga
gttatcagtatacgaagtaagatgggagaggataaaataaagattgagcggccaggaggt
tcactgtgccctatttggaaaatactatggaaccagaacaaaaataactccaatgatgtt
cttactgtttgtgattggggacaaaacctttccttttaccatttgaatgggaaacagatt
ggcaaagatacgaaactagaatttgacccatgtgcactccagttttttgatgaaggaagg
tacttggtggttggtggatctaacaggaagacatccttgtactcgaaagaaggacatttc
cttggtatagtgtccgacagcaacagtggttgggtttggtccattgcttgcaaaccagat
ggcaatgttgtggttgttgggcaccaggatggcacgataacatgtcacagtttaaccttc
tccactgtgcatggcttgtacagagactgttacgccttccgacaattgcttaccaacgtg
gtggtgcaacgactcaactctgatataatggatgtcgatctggaagaagatgactcatca
aagatcaccatcaagtgcaatgatattgtcaagaagatatcagtttataaagataagctc
gcggtccaactatcagatcgtattgtagtttacaagatggtcactaaagataccacagtt
acctacaaacctgtgaataagattctgaaaaaatttgagtgcaatctgttggttgtatgc
agcgaaaatattattctctgtcaggaaagcaaactgacttgtttttcaatggacggagag
aaacagcgcgagtggttgcttgaagcaaacatcagatatatcaaagtgattgggggacct
gctggtagagaggggatgctattagggttgaaaaatggacaggttttacaaatttttgtt
gacaatccatttccgatcgagatgcttaagattaacagctccatccggtgtcttgatctg
agcatgaaacgaacaaaacttgcgataatcagcgataactcaacatgccatgtgtatgac
atcgcaactaaagaacttctctttgaggaagtaaatgccaacagcgtggcttggaacaca
cagaacgaggaaatgctttgttactcaggtaaaggttacttgggtatcaaagcaggatca
ttcccagcacagcaacgacgcatgaatggcttcgtagtcggctactgtggctctcgtata
ttctgcttacacgtgcatgctatgagagcagtggatgttccacaatcggcaccaatgtac
cagtaccttgatcgacaattgtacaatgaagcataccagatagcatgcttgggtgtgaca
gacacagattggtacaatctatcacagaaagctctagaaaatttgagttttgacgttgct
cggaaagccttcacgagaatccgtaatctaagatatctggaacttattcaaaacatagag
gatcgtcaaaaacgtggtgaaaacaagaccgaccttttcatggctgacatccatgcttat
agaagtgaatttgctgaagctgcaggttattataagaaggctggtcactcacagaaagca
gtggatatgtatactgaccttcgcatgtttgaacttgcaaaggaatatgtagagaccagc
gatccagtagagcacaagcaattgatggcaaaacaagcaaactgggccaaaaacacaaac
gagcctagagaagccgctaagatgtatctggctgccggtgaaaacttgaaagctcttgat
ataattggggaacatgggtggacagatatgttaatggaggtcgcccgaaaattggataaa
gccgacagggaggcgttaacaaagtgtgcgttctatcttaaacggctacaacagtatgct
tactgtgcagaggtgtataataagatgggtgacaaaaaagctcatatacttttgcatgta
gaaacaaagaactgggatgaggctttctcgttggtggaaaagtttcctgagtttaaagat
gacgtttatgttccccatgcaaagtggttggctgaaaatgataagtttgaagaagcacag
aaagcattccacaaagctggtcgcattactgaagctctgcatgtactcgaacaactaact
gagaatgcagttgatgaatgtagatttaacgacgcaggttactactactggatgctatct
atgcagtgtctagacatagctgcagagaaaacaccaaagaaagcagaaatgctgaagaag
ttcaaaaaatatcagaaacttgctgagatatattatgtgtatcactccatacaaagatac
actgatgaaccatttacttcccatttacctgaagcattattcaacattgcgaggtttcta
cttcacagtatatcgggttcaaatccgccaagaggggtttcgaaagttgcgaccttatat
gcgctcgccaagcagagcagatcattaggtgcgtacaagctagcacgtcacgcatatgaa
aagctacatgcattgaaattacctttgaggttccaggacctgattgatttgggttcagta
acaataagatctaaaccttaccatgataatgaggatctgcagccaatgtgttatagatgt
tccactactaatccattgctgaatgcacaaggcagttcatgcattaactgtcatcagcca
ttcgtttattctttctcttcatttgaggttcttccactcgtggagttcacgctggaggaa
gggatcggtgatgaagaagcgtgtagactcatcgactcctccatcaaacaagcgaagtcc
aacgaatggaaggacacagagagggatgcgcaaacattaagaatggatgaagaggaggaa
gaagatccgtttactgctcgacttctcacttttgagggtggcggagactacttgcccgtt
gttgtgaacaggtcagttctgagagctctcccacgccgtgaggttctcgtacgacgctgg
gcccctccgttacgatttcaatatttcaaaaacctaatgcctgaggtggcagttgcaatg
tgcgattcatgctttcagatgtttcatgccgatgactatgagttgatggtgcttcaaaaa
cagtgttgcccgttttgtcgcaaagcttcagacgcccatgaggacaagccagaaatgtaa

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