KEGG   Ciona intestinalis (yellow sea squirt): 100185020
Entry
100185020         CDS       T01056                                 
Name
(RefSeq) DNA-dependent protein kinase catalytic subunit isoform X1
  KO
K06642  DNA-dependent protein kinase catalytic subunit [EC:2.7.11.1]
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    100185020
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:cin01001]
    100185020
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cin03032]
    100185020
   03400 DNA repair and recombination proteins [BR:cin03400]
    100185020
Enzymes [BR:cin01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.11  Protein-serine/threonine kinases
    2.7.11.1  non-specific serine/threonine protein kinase
     100185020
Protein kinases [BR:cin01001]
 Serine/threonine kinases: Other
  PIKK family [OT]
   100185020
DNA replication proteins [BR:cin03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    100185020
DNA repair and recombination proteins [BR:cin03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA-PK complex
     100185020
SSDB
Motif
Pfam: DNAPKcs_CC5 DNAPKcs_CC3 PI3_PI4_kinase FAT FATC
Other DBs
NCBI-GeneID: 100185020
NCBI-ProteinID: XP_018666849
LinkDB
Position
3:complement(3106615..3136126)
AA seq 2282 aa
MKCLAYRLLELMFALLPEDQTKPSSPVNHSFTSSQLTQSGNSLIKTFMLRVNRDRNENMK
GEKVLLEERRQFHCGVYNALIAAVISTQSSIKWFKVFLFDENPSKQQYFLNNVLDCNKNY
TFDTEISQPLTKRKKFVAIRKKKAEKEGEASIQYMASLAGSSLSEEISVFDRNRSLVVPN
TSSANISSMSVTNSTDEFENTDSQPAIATTFSGNFVELEVDSLNEHECMPALVGLITHMH
ENNIGFPEEEKEEESSLPSWMSSIHKKLSSSSTSKNVRLFIAKLIINCEQYFRPYAAHWI
TPLAQLILREDCGVNGIDTMVCDILVTVLSWNNIAVPEDSVEGKSLVRGLLEQLSRRIHH
NNRAIIRHNLDLIKTTLECWGERVRGGVDPNIVYQLCESNDVDLKENFAGLQLLGAFLVN
KCSPFAGEYTLDVDREQYYQRIFRNMRFKRKEIYDAASEVAGLTLNYITNVEKEENGNVH
EMVRNNLSALFKNPKTQDIFITCLHKVSMHFPPMVDNFVSAVTGLLPKMHGDLRTFCYEI
INQRASHIEDLYQQLDMKNLITNFSVGGDPLQLASLRICSKLVMATIINTGESPTDQQYK
IVLQFLPEIFKVFSKHSNPICRKEAFELAMMLYDHQKSLSSTDQHSEIMKLSKIFLLKCL
SDPEELLRNRAMNFWSDESRLPITPIHKVSGIFQDLYDSSLEESRFLCNAVGLILQSTSL
SPDFDRAIFDLPLSECVFQEYEIDNSWRHQYASLVPMFVETLGNSSGDVTSRKQNPNRIL
ATQQDLQFTATVEGGKSSYNWMTGSSLDTFSSLAVGDHQKSSLLASSITSPASYRRLGRK
LVTDKPGPEFGKVDLVKQEGQKKKQRGFGVNIDVQRLRRRFLKEQTDSRINFARVQEVKK
RRQETFQKEHEKRRSNDVTLHRRYRDGELPDVQIPNKSIIAPLASACQYDAVLSKSVLSS
LVCAILKEERKRDGEENTPANIGDKMFQILEISTEKNPSLIACVEEVALRNHDYVGFNKL
IPAHISSSSLASNKHALGITLLEQYIIDDKHSVKEPSHKKQKTHVSGMGNNPVLWIELAR
LYKSLDEFDVLRGIFSGDSESNKSTAKGLALEDCGDYTAAYKVYNEALHKEDWENDVSEV
EKDVWEDCLINCFKNLARWDQVNAVCDAELNDYLEDTNCSLKQVWRVPEYEQRFLDTSVH
SKLLLLLQGNIEAGNELCEFFDDSMQGDDARKNMVEKNYSEHLAMMYIYKGDYDSAKFYA
DKAADSFSHQWSNLDSLMKDRKENLQCIFPRLNDINDFLDLVCGENEISSQSVKNLVSCW
SNSLPNTNFGSITAWNDCIVYRSFFMDQLQKKLNIESDSMLHEDIQWMEKTKFQLRLNMM
ESARLQGNHVVVARIRSSLKKEHELLNSDKNLSFKLTHEAALSYLAQAESLALNNKPNNN
KIKYFIDSVECLNEQNEFITESATNIERIHHLLALATTHHLTSSNLNNGEDADIEQVKEI
FGTDINADNIRQTLSNKAFKFYLKAAKFGEALNNIGEGSLQQKSYIALAKFCDEQLRNGD
QAEGLLSPTSKSVKVEYAVTMTTYVLRAMRIQSGDLSKASWSFPRLLQLVQDFKGNILDS
FIQESSALPSWMVLSWLGHLVALLDRDVAPAVQPILTRVMRDYPQAIVFPFKAAFEGYKF
EENEAGKKNKQFVKKVKHHLKQEVPLADEFVRQLRRICHPSIAFKDWKEDFTNLFCSKET
SRMKHIVENYQNMFNDFFQCIPPAASEESSLYGDSPTSDSVGLIWTKFSKNYKAKVERTF
GGQTGDKLSRMNLKQCRGEINNLYSDIEKFTLGTSSLNDYSPWLAKFQSLQRSSKELEVP
GQYDGKSRPLLEYHATITGFDDRVTMMTSIRKPCKIIMRGSNEKDFGFLIKGGEDLRQDQ
RIQQIFVIFNQLLESDMGCRKRNLSMRTYQVIPISSKVGMIEWVDNVVPYIEFISQQAKR
MNCNSCITEPARTWIPKNMVQKPPCETYGVLMQRGSYAQVVEKFKRAENMLPWDLFRQAY
IRLCANPESFVALRKRFTSSYAVMCVTHWLLGIGDRHTSNFMLSLTTGEVVGIDFGHAFG
SATEVLPVPELVPFRLTNQIINLLSPHSAIHGELRHVMVRCLSALRSRTDTILPLLDVFV
KDPSVDWAKFGKRSRDQDQRYSDSDVESSDRVWYARRKMALTKKKLEGENPSSITCDELN
HNSTITKFKKSYCCIASGDTKNIRFLMPKSGLSVSEQTDCLLDLATDPNVLGRMWVGWKP
WI
NT seq 6849 nt   +upstreamnt  +downstreamnt
atgaaatgtctggcatatcgactactcgaactcatgtttgcgctgttacctgaggaccag
accaaaccaagttcacctgtcaatcattctttcacatcgagccaactaacacaaagtgga
aactctttgattaaaaccttcatgttgcgagtcaacagagacagaaatgaaaacatgaaa
ggtgagaaggtattgcttgaagaaaggagacaatttcactgtggagtttataatgcattg
atagctgctgttatttctacacagagttcaattaaatggttcaaagtttttctttttgat
gaaaatccctccaaacaacaatatttccttaataatgtgttagactgcaacaaaaattat
acttttgacaccgaaataagtcaaccattgactaaacgaaaaaagtttgttgcaatcagg
aaaaagaaagcagaaaaagaaggtgaagcatccatacaatacatggcatcattagctggg
agcagcttaagtgaggaaatcagtgtatttgacagaaacagaagtcttgttgttccaaac
acttcaagtgctaatatttcaagcatgtcagtaaccaattcaactgatgagtttgaaaac
actgattcccaacctgctattgcaacaacatttagtgggaactttgtggagttagaggtt
gatagcttgaatgaacatgagtgtatgcctgcattggttggcctcatcacacacatgcat
gagaacaatataggtttcccagaagaggaaaaagaagaagagtcttctctcccttcatgg
atgtcctccatccataagaagttgtcatcctcatccacgagtaagaacgtgagactcttc
attgcaaagttgatcatcaactgcgaacaatatttcagaccatatgctgcacattggatt
acaccacttgcacaattaatattaagagaagattgtggtgttaatggcattgataccatg
gtatgtgatatactggtcactgtgctttcatggaacaacattgctgtaccagaggattcg
gttgaaggcaaaagtttggtccgtggtttgttggaacaattgtctcgtagaatccaccac
aataatcgagcaattatccgtcataatctcgatcttattaaaaccacccttgaatgttgg
ggtgagagagtacgagggggggtggatcctaatattgtgtatcagctgtgcgagagcaac
gatgttgatttgaaagaaaactttgccggtcttcagttgcttggagcgttccttgttaat
aaatgttcaccatttgctggggaatatacactagatgttgatagggaacaatattaccaa
agaatctttcggaacatgcgtttcaagagaaaggagatatacgatgcagcttctgaagtg
gcgggacttacattgaattatattactaatgttgaaaaggaagaaaatggaaatgttcat
gaaatggttcgcaacaatctctctgccctgtttaaaaaccccaagactcaagatatcttc
ataacttgcttacacaaagtttccatgcatttcccaccaatggttgataactttgtatcc
gctgttactggattgctaccaaagatgcatggcgacctacgtaccttctgctatgaaata
atcaaccaacgagcttcacatattgaggatttgtatcaacagctagatatgaagaatctt
attacaaatttctcagtgggtggagatcctcttcaacttgcctcgctaagaatttgttcc
aagcttgtcatggcaaccattatcaacacaggggaatccccaacagatcagcaatacaaa
attgttcttcagtttttaccagaaatttttaaagttttttcaaaacattcgaacccaatc
tgccgaaaagaagcttttgagctcgctatgatgttatatgaccatcagaaaagcttatca
tcaactgatcagcattctgaaattatgaagttgtcaaaaatatttcttcttaaatgtctc
agtgatccagaagagttattgagaaatcgagccatgaatttctggagcgacgaaagtcgt
cttccgattactcccatccataaagtgtccggaatcttccaagatctttacgactcttcc
ttagaggagtcccggttcctctgcaatgcagttggattgatcctccaaagtacatcattg
agtccggactttgatcgagcaatatttgatcttcctctctccgagtgtgtatttcaggag
tatgagatagataacagttggagacaccagtacgcgagtctggttccaatgttcgtggaa
actctgggtaattcatctggtgatgtaacctcacgaaaacaaaatccgaataggattctc
gcaactcaacaagatttacaattcactgcaactgtggaaggtggtaagagttcatacaat
tggatgacgggtagcagccttgacacattttcaagccttgctgttggagatcaccagaaa
agttctttactagcaagttccataacttctcccgcctcatatagaaggctgggcagaaaa
cttgtgacagataaaccaggcccagagtttgggaaagtggatttggtgaaacaagaagga
cagaagaagaaacaacgaggttttggggtaaacatagatgttcaaagattacgcagaaga
tttcttaaagaacaaacggattcaagaatcaactttgctcgagtgcaagaagtaaagaag
agaagacaggagacatttcagaaagagcatgaaaaacgaagatcaaatgatgtcactctg
catcgaaggtatagggatggggaattaccggatgttcagatcccaaacaaatctatcata
gctcctcttgcatccgcgtgtcagtatgatgctgtcctctcaaaatctgttctctcctct
cttgtgtgcgccatcttgaaagaagaaaggaaaagggatggggaagagaacacccctgca
aacattggtgacaaaatgtttcaaattcttgaaatttcgacggaaaaaaatccctccctt
attgcatgtgtggaagaagtagcgcttcgtaatcatgactatgtgggattcaacaaactt
attcctgctcatatttcttcatcatctcttgcatccaataaacatgctcttggcatcact
ttgttggagcaatacataatcgatgacaaacacagtgtcaaggaaccttcacataaaaaa
cagaagacacatgttagtgggatggggaataaccctgtgttgtggattgaactagcaaga
ctttacaaatcactggatgagttcgacgtcttgcgtggaatattcagtggagattctgaa
tcgaataaatcaacagctaaaggattagctttggaggattgtggtgattacactgctgct
tataaagtttacaatgaggcgctacacaaggaggattgggagaatgatgtaagtgaggtg
gagaaagatgtttgggaagattgtttgattaactgcttcaaaaatcttgccagatgggac
caagttaatgcagtttgcgatgcagaacttaatgattatctggaagatacaaattgtagc
ttaaaacaagtatggagggttcctgaatatgagcaacggtttctggacacatcagttcat
tcaaaacttctgctgcttcttcaaggcaacatagaagctggaaatgaactttgtgagttt
tttgatgattcaatgcaaggagatgacgctaggaaaaatatggtggagaaaaactactct
gaacatttggctatgatgtacatttataagggtgattatgacagcgcgaagttttatgct
gataaagcagcagatagtttttcccatcaatggtccaaccttgactcacttatgaaggac
aggaaagaaaacttacaatgtatttttcctcgattaaatgatataaatgatttccttgat
cttgtatgtggggagaatgaaatttcatcacaatctgtaaagaatcttgtctcgtgttgg
agcaatagcttgccaaatactaactttggttcaattactgcctggaatgactgtattgta
tacagatctttttttatggatcagcttcaaaagaaacttaacattgaatctgactccatg
ctacatgaagatattcaatggatggaaaagacaaagttccaacttcggctaaatatgatg
gaaagtgcccgcttacaaggaaatcatgtcgtagtagctcgtataagatcatccttaaaa
aaggaacatgaacttctaaattctgacaaaaatctttcgtttaaactgacacacgaggca
gcattgtcatatctcgcacaagcagaatctcttgctcttaacaacaaaccaaacaacaac
aaaataaaatattttatagattctgtggaatgcttgaatgaacagaatgagtttattaca
gaaagtgccaccaacatagagaggatacatcaccttcttgcacttgctaccacacatcat
cttacatcaagtaacttaaacaatggggaggatgctgatatcgaacaagtcaaggaaata
ttcggaactgacattaatgccgacaacattcgtcaaactctttcaaacaaagcgttcaag
ttttacctgaaagcagcaaagttcggtgaagcattaaataacattggtgaaggtagcctg
cagcagaaatcttacattgctcttgccaagttctgtgatgaacagcttaggaatggcgac
caagctgaaggtttactctcaccaacttcaaagtcagtaaaagttgaatatgctgttacc
atgacaacttatgtgttacgagccatgagaatccaatccggtgacctttctaaagcgagt
tggagtttccctcggttgctgcaacttgttcaggattttaaaggaaatattttggattct
tttatacaagagtcatctgctttaccaagttggatggtgttaagttggttgggtcatcta
gtggcattgttggacagagatgtagcacctgccgttcaaccaatactcactcgagttatg
cgggattatccacaagcgattgttttcccattcaaagctgcatttgaaggatataaattt
gaagaaaatgaagctgggaagaaaaataaacaattcgtaaaaaaagtaaaacatcacctg
aagcaagaagttccactggctgatgaatttgtgcgacaattgagacgaatatgtcatcct
agtattgcgtttaaagattggaaagaagactttaccaacttgttttgttcaaaagagaca
agccgcatgaaacatattgtggaaaattatcaaaacatgtttaacgatttcttccagtgt
attccccctgctgcttcagaagaatcatcactttatggagattctccaacctctgattca
gttggcttaatatggacaaaattttctaagaactacaaggcaaaggttgagagaacattt
ggcggacaaactggtgacaaactgtcaaggatgaatttaaaacaatgcaggggtgagatc
aacaatctttattcggatattgaaaagtttacccttggaacatcttctcttaatgattac
agtccatggttggctaagtttcaatctttacagaggagcagcaaagaacttgaggttcca
ggccagtatgatggaaaaagtcgtccactcctggagtatcacgcaacaatcacgggattt
gatgatagggtcacgatgatgacatcaattcgtaaaccatgcaagattattatgcgtgga
tcaaatgaaaaagattttggatttttgattaaaggtggtgaggatttacgtcaggaccaa
cgtatccaacaaatatttgtcatttttaaccagttgttagagtcagacatggggtgtagg
aagagaaacttatcaatgagaacataccaggttatcccaataagttcaaaggttggaatg
attgaatgggtggacaatgtggttccttacattgaatttatttcacaacaagcaaaaaga
atgaactgcaattcttgtattactgaaccagcaagaacttggattccaaagaatatggtt
caaaaacctccttgcgaaacatatggagtgttaatgcagcgcgggagctatgcacaggta
gtggagaaatttaagagagctgaaaatatgttgccatgggacttattcaggcaagcctac
ataaggttatgtgcaaatccagagtcatttgttgctctgcgcaaacgttttacatcctca
tacgctgtcatgtgcgtcactcattggttacttgggatcggcgatcgtcacacttctaac
ttcatgctgtcattgacaactggagaagttgttggcatcgattttggtcacgcctttggt
tcggcaacagaggttcttcctgtgccagaattggttccattccgtttaacaaaccagatc
atcaacctgctgtcaccacattcagccattcatggcgaacttcgccatgttatggttcga
tgcttatctgctctcagatctcgtacggatacaattctaccgctgttggatgtttttgta
aaagatccttctgtggattgggcaaaatttggaaaacgaagtcgtgatcaggaccaaagg
tactcagatagtgatgtagagtcatccgatagagtttggtatgccaggaggaaaatggca
ctcaccaaaaagaaacttgaaggcgaaaatccttcatccataacatgtgatgaattgaac
cacaacagcacaataacaaagtttaagaagtcgtactgctgcattgcatctggggacact
aaaaatataagatttctaatgccaaaatcgggacttagtgtctcagagcaaacagactgt
ttattggatttggcaaccgatcccaatgtgcttggtcgaatgtgggttgggtggaagcct
tggatttaa

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