| Entry |
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| Name |
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like isoform X3
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| KO |
| K23113 | structural maintenance of chromosomes flexible hinge domain-containing protein 1 |
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| Organism |
cin Ciona intestinalis (yellow sea squirt)
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| Brite |
KEGG Orthology (KO) [BR:cin00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:cin03036]
100185596
03400 DNA repair and recombination proteins [BR:cin03400]
100185596
Chromosome and associated proteins [BR:cin03036]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
100185596
DNA repair and recombination proteins [BR:cin03400]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
100185596
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
Unknown
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| AA seq |
1854 aa
MNPLPFAFAELIDNALAATARNVGPRIIELSLHFNTSTAEHMLCVYDNGQGMSSRQLNNW
AIYRLSKFNRKDRRDIGEHIPYHDDENLATPKSLNSDISWFGVGGKQAIFFIGNSTRIIT
KQRNSCDVHEFTMSKNEFKRKEKNKEAIFAGYIRNRTFGDSSHIAHSDDVIRDFINSEND
DSFTRVIVSGISEHHTHFMKHGFDIWNRQLAHIYHYYIHGPEGNTSMSRNRKNIGVSDVN
ILVTLHENGQKILSTNLRDIEDDLETKYIRTSANTFEFVAKSDGENGGIVEGMIRYHPFL
YDRETYPIDSTQESSAEYDGTGEPPGRGRRPIFECYWNGRLIPYTFIDDFDWCKIPRKQA
ALLGDCFYRISGCLFSNDKFQVSTNKLTFIDLDSKLKDRNTTFNHMVLGEEQNGQINRHF
VDWLKECHEKHDKQVKFLKHVSVVMKNDGTHKSKHTLYKAIEWEGRVFSKGQLVRTQRTV
PVICGTIRKFLLPGEYDGDVYSVGGEFELIQEPQALYGEIRCFPLSKLDRNVSVEIVQDL
VQREEGKLPATIEVEWPDNDEVTEGQVSFAGVNIGAMQAVILNQDDEPIHKLFSNNETRK
LLVEQRVYLSPPSGEMSVQVSSHVTSHSKNGDYYFERIENLKAPGNYSVTIQAALDESGV
YVYGDGRKLPSLTINFCIQESPPHRFMVGILESPLRIGCPFDLPLDMQDDNGHSTRPTFE
VDPILESNGLELSYDSTEIKGNSLVIKDVVAIGDVMSQQGKNFQMKVIVPGLALESQTLK
IRLLPGDPHSLAITSFNDGFEEIQFEQGTTELPEFLTFENSSNISLNVGVVDIAGNLTLK
PRLTVQCKFSGSPGLPTWTCNCSNTGYGVIGGKIKLKHLKSEKKIQAKIEVQGSKEITAL
QQKFILKPSSKICFLNVFYKKPSAANNEKVEKLKRGQDMYFEAGETMQNISFQLLDEAKR
SVPIDVSKHASNIQVNWTDEISSSDLENGFLPDVFIPTNVSDTRFCQVTYLGEKNVHFSF
NIKPIAGQPAGIKVTIHGSRETRIGMIRREPISISLLDSFSNQLNIAPNQLGLVSVKAEG
LDESILSKYIEGKCVVVSDIQFNQGPLGSKELVISYGSDIQEYAVLQLVAGTPVTLQVKA
WGDDPLPVLSGTRIRDPISVQLLDGWGNPSPENGVKVLLGKDPGLKLTPSAGVLKTNDDG
FVSFQKFSFSGKCGEFWLQPRAIYNRRAMEGRKLFISLLPNTETPVSIQYRKSGQETTVT
VGTPWPEYDVDILSEEETRVTTSVNLCMVIWKGKTKNDEIPSNAEWHRAVASNGHHSFHG
IKSPTKVGEYCCVFCVTENLASKTAVLTSEVFTMKTVAGVPKCLLPSSEPGTPTVSNAHV
AVNRILIRNLKLQLMDGMGNLCNDDIKSNISVTIQPCDQTLKCSETPMFVGNASRLFVPI
RKGEALLQNLTLQENSPGIDGSQYILHCEIQNDERNIQPYMLKFLFYNDAKKYAQMSELV
QQRDVLLHAVKMYEETFSAHKTLFDEIKQGCAEADKKKTNLIRDLQKLGLSISSSCQSCD
ISQLIEHCSLRRNSLMHDDKRKCLLPEYQDASSEVLGKIGHLALISDDDAACVLSWHMSA
DMDCLVTFTTKKAREIHKLSDGRQQVLPLDSIYKKNLSDWKKQLPHVKARISQDQVTGNP
IFARKLLNFQKDQVNCRMIFTMLLGDTILIDDLDSANQYRNMVVKHTHCPTILTRNGHRI
RSNGKFGGNQNRAPAVEKLRGMVFGAPMSEEYATCVKQIEILENIKSVIEEIHSSQEELE
SLQLETDEMKFKEQEHKEAQERLNAIEKKIGFHNPQRRSLPESTRQTRKRFKKS |
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| NT seq |
5565 nt +upstreamnt +downstreamnt
atgaacccattaccttttgcattcgctgagctaatagacaatgctttggctgctacagcc
aggaatgttggtccacgaataattgaattaagtttgcattttaacacctcaactgccgag
catatgctatgcgtatatgacaacggacaaggcatgtcatctcgacaactcaacaattgg
gcgatttatcgactttcgaaatttaatcgtaaagatcgaagggatattggagagcatatc
ccatatcatgatgatgaaaacttagctaccccaaaatcgctcaacagcgacatctcctgg
ttcggtgttggtggaaaacaagcaatatttttcatcggaaattcaacacggataataaca
aaacaaagaaattcgtgcgacgtgcatgagttcacaatgtccaaaaatgaattcaaaaga
aaggagaaaaacaaggaagcaattttcgctggctacattcggaatagaacgtttggagac
agttcacacatcgcacattcggatgatgttattcgggattttattaactcggaaaatgat
gatagttttactcgtgtcatcgtgtctggtatatcggaacatcacacgcatttcatgaag
catggatttgatatatggaatagacaacttgcacacatataccattactatatacatggg
cccgaaggcaacacatcgatgtcaagaaacaggaaaaatattggggtttctgatgttaat
attttggtcactctgcacgaaaacgggcagaaaattttgtcgacgaaccttcgtgatata
gaagatgacctcgagacgaaatacattcggacctccgcgaatacttttgagtttgttgcc
aaatctgatggagaaaatggtggcatagtggagggaatgatcagatatcatccattctta
tatgacagagagacttatcctattgacagcactcaagaatcaagcgcagagtatgacggg
acaggggaacccccgggaaggggaagacggcccatattcgaatgttactggaacggtaga
ctaattccatacacttttattgatgattttgattggtgcaagataccacgcaaacaagca
gcattactgggtgattgtttttatcgaatttctggttgtctgttttccaatgataaattt
caggtaagcaccaacaaactgacttttattgacttggactcgaaactaaaagacagaaac
acgacattcaaccacatggtgttaggtgaggaacaaaacggacaaattaatcggcatttc
gttgactggttgaaagaatgtcacgaaaaacatgataaacaggtgaagtttttaaaacat
gtttctgttgtaatgaaaaacgatggcacacataaatctaaacatacactgtataaagct
atagagtgggaagggagggtctttagtaaaggacaattggtacgaacgcaaagaaccgtt
ccagttatttgcggaacgattcgtaagtttttacttcctggtgagtatgatggagatgta
tattcagttggtggagaatttgaacttattcaggaaccacaagcgttatacggagaaatt
cgctgctttccgttgtcgaaattggatcgcaacgtttcggttgaaattgttcaagacctt
gttcaacgagaggaagggaagctccctgctacaattgaagttgaatggcctgacaacgat
gaggtgactgaaggtcaagtttcgtttgctggggttaatataggtgcaatgcaagccgtt
attctcaaccaggatgacgaaccaatccacaaactgttttcgaacaacgagactcgaaaa
cttctcgtcgaacaaagggtttatctatccccccctagtggagaaatgtccgtacaagtc
tcaagtcatgtgacgtcccactcaaaaaatggcgactattattttgaaagaatagaaaac
ctaaaagctcccggcaactatagcgttactatacaagcagcattagatgagagtggggtg
tatgtatacggtgacggtcgtaagttgccatcgctgacaattaatttctgtatacaggaa
tctccaccacacaggtttatggtgggcattttggaatcgcctttgagaataggttgtcca
tttgacctaccattagacatgcaagatgataatggacattctacaagacctacttttgaa
gtggatcctatactagagtcaaacggtttagaattatcttacgattctacagagataaaa
ggaaattctctcgtcataaaagacgttgttgctattggcgatgttatgtctcaacagggc
aagaattttcaaatgaaagtgattgtacctggtcttgcattggaatctcaaacactgaag
atacgtttactgcccggtgacccccattcacttgctataacttcatttaatgatggattt
gaagaaattcaatttgaacaaggtacaactgaactaccagaatttctcacttttgaaaat
tcttcgaatatttctctaaatgttggtgttgttgatatcgctggcaacctgacattaaaa
ccacgtcttactgtgcaatgcaagttttctggatcacctggtttaccaacctggacttgc
aactgctccaacactggttatggtgtaattggtggaaaaattaaactgaaacatttaaaa
agtgagaaaaaaattcaagctaagattgaagtacagggctctaaagagatcacagcgttg
caacaaaaattcattttaaaaccttcgtcaaaaatttgttttttgaacgttttttataaa
aaaccttcagcagcaaacaacgaaaaagtcgagaaactaaagcgaggtcaagacatgtat
tttgaagctggtgaaacgatgcaaaatatatcgttccaacttctagatgaagcaaaacgc
agtgtacctattgatgtatctaaacatgcttcgaatatacaggtaaactggacagatgaa
atttccagctcagatttggaaaacggtttcttaccagacgtatttattccaactaatgta
tcggacacaaggttttgtcaagttacttaccttggagaaaagaacgttcatttttctttc
aatataaagccaatagcagggcaaccagctggaataaaagttacgattcatggaagtcgt
gaaactcgaattggtatgatacgaagggagcccatctcgatttcactacttgatagtttc
agtaaccagcttaatatagccccgaaccaacttggtttggttagtgttaaagcagaaggc
ttggacgagtctattctatcaaagtatatagagggcaaatgtgttgtggtcagtgacatt
cagtttaatcaggggcctcttggtagcaaggagctagttatttcttatggatctgatata
caagaatatgctgtgctacaacttgtagctggtacgccagtcacattacaagtaaaagcg
tggggcgacgacccactgcctgtgttaagtgggacccgaattcgggacccaatctcagtt
cagctgctggatggttggggaaacccctcacctgagaatggggtcaaagttttactgggt
aaggacccgggtttgaagctcaccccttcggctggggtcttgaaaacaaacgatgacgga
tttgtttcgtttcaaaaattctctttctcaggcaaatgtggcgaattctggcttcagccg
cgtgctatttataaccgaagagcaatggaaggtcgcaaattgtttatatctcttctcccg
aacacagaaactcccgtttcgatacaatatcgaaaaagtgggcaagaaactactgttaca
gttggtaccccttggccagaatatgacgtcgatattttatctgaagaagaaacaagggtg
acaacatcggttaacttatgtatggtcatttggaaaggtaaaacaaaaaacgatgaaatc
ccctcaaatgcagagtggcaccgtgccgtggcatctaatggacaccatagttttcatggc
atcaagtcaccaacaaaagttggtgaatattgttgtgttttttgcgttacggagaatctt
gcttcaaaaactgcagttctcacaagtgaagtttttaccatgaagacagtagcaggtgtt
ccaaaatgtctacttccaagttctgaaccaggaacaccaacagtatcaaacgcgcatgtt
gctgtaaatagaattctaattcggaatcttaaactccaattaatggacggaatgggaaac
ttgtgcaatgacgacataaagtctaatatctccgttacaatacagccctgtgatcagaca
ttaaagtgtagcgaaacccccatgtttgtgggaaatgcttcgagactgtttgttccaatt
cgtaaaggagaggctttactgcagaatctaacattgcaagagaattcacccggcatagac
ggctcacaatatattctacattgcgagatacaaaacgatgaaaggaacatacaaccgtat
atgttaaagttcttattttataacgatgcgaaaaaatacgctcaaatgagtgaattagtt
cagcaaagagacgttttattacacgctgtaaaaatgtacgaagaaactttctctgcacac
aaaacattgtttgatgagataaaacaagggtgtgcagaagctgataagaaaaaaacgaat
ttaattcgcgacctgcaaaagttggggttatctatctcaagttcgtgccagtcatgtgac
atttcgcagttgatcgaacactgctcgttgaggcgtaacagcctaatgcacgacgataaa
agaaaatgtttattgccggaataccaggatgctagtagtgaagttttgggcaagattggt
cacctagcattaatctcagatgacgacgcagcgtgtgtattatcgtggcatatgtccgct
gatatggattgtcttgttactttcacaactaaaaaggcaagagaaatccacaaactatct
gacggcagacagcaagttttacctttagacagtatctataaaaaaaatctttccgactgg
aaaaaacaactgccgcatgtaaaagcaagaatttctcaggaccaagtaactggaaaccca
atttttgcgcgaaaacttttgaatttccaaaaagaccaagtcaactgtagaatgattttc
acgatgcttctgggcgatactattcttatagatgacttagattctgctaatcaatacaga
aacatggtggtaaagcacacgcactgtccaacgattttaacccgcaatggtcaccggatt
cgtagcaatggaaaatttggtggtaaccaaaaccgagcaccagctgtcgagaaacttcgg
ggcatggtgttcggtgctccaatgtcagaagaatatgcaacatgtgttaaacaaattgaa
attctggaaaacattaagtccgttatcgaagaaattcattcgtcacaggaggagctagag
agtctacaacttgaaacggacgaaatgaaatttaaagagcaggaacacaaggaggcacaa
gagaggctaaacgcaatcgaaaagaaaataggtttccacaacccacaacgaagaagttta
cctgaatctacacggcaaaccagaaaaagattcaaaaaatcgtaa |
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