Ciona intestinalis (yellow sea squirt): 101242318
Help
Entry
101242318 CDS
T01056
Name
(RefSeq) lysosomal-trafficking regulator-like isoform X1
KO
K22937
lysosomal-trafficking regulator
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
101242318
Membrane trafficking [BR:
cin04131
]
Endosome - Lysosome transport
Others
Others
101242318
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
101242318
NCBI-ProteinID:
XP_009860308
LinkDB
All DBs
Position
11:complement(2333855..2377353)
Genome browser
AA seq
2324 aa
AA seq
DB search
MSASQQNLSHTCDDEIIYAGDWASVQLLKRVGSQRNESLNENSSLVYLLQGDGSNFLRIL
LQLSRKGYVCSEQICDLCCSILVALVAIHPNDFSKHKGTLTFTYIDDITKYSDVTTPSSD
HDIVAFYNNIRRQSAKKTSEGKGVKASWDKRKKKLRHLTGRWYEALSTDCDSSDGQSNDS
SVKKLPLLSNMMSTENSDNFLFHPSTTPEPPKNDPSPSENKDPPPNLENQTTESSNKPFQ
GPFELATVLLDLLESSFCSMHQRSLHGKSPSRDGYSPMSVAMQLVSAITALQQTKGSLPA
DPCKYSSAENDKFMSQISYEDTRWTPESLSHLQRLVLRTVLVLCHVSLLEGQNLQEMMKN
QAIESLMSVAQDILKEGGMVPHGTLPLRKKSLVTVATDANLSDQSIPCPETQQPPPTIPS
VSVDEVPSFLNQFTTKNMNKNTGYTLNPPQEDSVIPVSLSFVAEIMKGLFSLLTSCLKQS
MGPVSPKQLTEVIMLFHEFDACNGFSVFSKLLMRLNSISERLFPSTEPISRTLKTCTLSP
VHSPTKTRPKQFGLSPKLPTAKQFFEKDNPVRILFNDLLGSFEKLITSVQKSKVEYVHRV
TCSRRTHRSCDLHKLVPSHHDILGEESKLRMKVSRPNTNSDLQSKPQVIYPLKPDYSTTK
HARTTSGRHEEPTCIIATCVQFLVNTLVNLSPNSSCVRHTLRTLDKVGVCQCQAVTLIVT
PLLTHLECWSDKMQNAMLGYVGKILLYHFMGSKTTPNSENLSSFFINIPTAWLLKPISLS
TDPLKLANKKGKNWRRSLPIDVSSSSESSASEISAEESFFLYNLSHPWLCLVMYRKLLAS
SDPDLSLKVALHLQTLSPHLPEESKMSLSSLVLLPILCSSSGIKYSLMRKELCSTGEVFR
EEILSIILCILLRYLESSDPCRAIFLRHGGLKAVNKILSHPKHSSQDADFSDHIRDLVFH
LGRAYLTSVTILSPDVSVAVFSYYKKPPPLLKQHSTEPTSDNSVAGPMKTFLRGFSWGSE
KFRTDAQERSTSLGSLRQKQENKSQINRDNQLTYTSTSIDELSVYYTELRKFVRVALALS
GASTNDRAKEKAKKSKNFNFARALSGESTDSDPEFRSRPRTRNLSETSGYRSTSPESLNH
SISNEIRSISSRSNNSTLSYISDSVSLPSDTDTFAWQQLVNYWQVLGLSVPMDNQISTSF
VELNGFEVALKLLTMISTSLNEYYLSEMNFTFATQDNTAAGSVLDKSISSSSLESPTSND
NPLTAPKTPPKIFLAEEHSQEEEMPFSSSPKDVDLQEPSTLTHSHPTIDVSSVDDLPDVP
DFGDAATDLKLVEMKLNLFCSCLRVCLFCSRRTDQFEIDVDDIISSLRPTLTGKLSSTYF
GTQLFSSMFQAAISPVSETADVLPKLTTVLQGLQRVITSGGSTTRSRTSTCHSRSNSASI
AINLMEEINNLDDDNDYDSESDDSTTGGYEGDSEHGLNKTPIAVPFKRWLDLPQTDGLRG
FPNPSFMRNNLEFTPGPLLHPELLLLAVELLGSKADHQNRNHADSDLEILKEKFAANAEP
LRSVDSDVRDCLIDSVGRALTRLAGFSKQNLDKMAKSDFASACIENLSDVLSSDKLHWKR
HRDIIFSLCMTLTKHYMTSKHLRLILSLFNSSSPPLQELLTCLLDLVEQQEFGPNFCLTF
SWKNVRMEEPTSGLPSDSESDSESLSLDEIVHTMSSQRSLTVWRVAPLHMQLENHIMWPP
LDSGVTISLWLRVGMLNPHDCGCYTNSWTEGHVIMVESEERDQVSSQSSPYVHLVSIGSK
QTMLQVWMENSTLIFRVCVDPNDEKPVGVLAQTECANFLQPNQWQHLTMTYTESRMPDKA
ILGKVHLILDCFIETDVILEFNLPQVATKSGLSSWRQTNPNPQLAMQKATFFLGHYDKLH
VNYTKSDDITMTSSTISVGNIMIFNLATFSCQSAFAIEQLGSDACCFTDCLTDSLKTNPS
IDSRIRFVNSDANPKITPERGVTPSPRLFKLLPQTFNSDLINDEVITGEIRPDFKTLQDA
LVLTYTPCEPMIFHRHSVAAPATPTKKRKLFRRATPDSLNLTPDPSPLVHSSEKVKVRKP
HKEHIVPNVYSGLNRALSQVGGIHVFLLLYPKVIEITSSLSHLSSDAREELQVLALRSLL
HLRASDTKRRREFLTSGVSSMLQKVMTKSDCVVGFRTLEELMNSVCSETVIQSYASVNNK
VEFQINLENSGLIHDHELLTTFILDWKIWHKAKNLEGEEDFSVWTLLLQSLESLIRDDHI
YQWFNIKALLRAKMVEKLLNNIQEMLNADVTPFHPHNLSFLWFR
NT seq
6975 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcatcacagcaaaacctcagccacacatgtgacgacgaaattatttacgctggt
gattgggcttcagtacagcttctgaaaagagtaggcagccaaagaaatgagagcctcaat
gaaaattcttctcttgtttaccttctgcaaggtgatggttcaaattttctaagaatttta
cttcagttatcaaggaagggttacgtctgttccgaacaaatctgtgacttgtgctgttcc
atcttggtggccttagttgcaatccaccccaacgacttcagtaaacacaaaggaacttta
acgttcacgtatattgatgacatcacaaagtactcggacgtgaccaccccatctagtgac
cacgatatcgtagctttttataacaatatacggcgacaaagtgctaagaaaacatcagaa
ggaaaaggtgtaaaagcaagttgggacaaaagaaaaaagaagttacgtcaccttacaggg
cgatggtatgaagctttatcaacagattgtgattcttctgatggtcaaagcaacgacagt
agtgtaaaaaaattgccccttctctccaacatgatgagcactgaaaattctgacaacttc
ttattccacccctccaccacacctgaacccccgaaaaatgaccccagcccctcagaaaac
aaggacccaccccctaacctggaaaatcaaacgacagaatcttcaaataagccatttcaa
gggccttttgaacttgccacagttttattggatttattggaaagctcattttgctcaatg
catcaacggtcactacatgggaaatccccaagtcgagatgggtattcccccatgtcggta
gccatgcagcttgtatcagcaatcactgcattacagcaaactaaaggttcattaccagca
gatccttgcaaatacagttctgcggaaaatgacaaattcatgtcgcagatctcctatgag
gacaccaggtggaccccagaatcgctgagtcacctacagcgactcgttctccgcacagta
ttggtgctgtgtcatgtttcactgttagaaggccaaaatttacaggaaatgatgaaaaac
caggcaattgaatctttaatgtcagttgcacaggatattttaaaggaagggggaatggtt
ccccatggaacactaccacttagaaagaaatctttagtgacagtcgccacagatgccaac
ctgagtgaccaaagcattccttgccccgaaacgcaacaacccccaccaactataccctca
gtttctgttgatgaagtcccttcatttctcaaccaattcactacgaaaaacatgaataaa
aacaccggatacaccttaaacccaccgcaagaggactcagtgattccagtttctttatca
ttcgtcgctgaaattatgaaagggctattcagccttctaacgagttgtttaaaacaatcc
atggggccagtttccccgaaacagctcacggaagtgatcatgttattccacgagtttgat
gcttgtaacgggttctctgtgttttccaaactccttatgaggttaaactctatcagtgaa
aggctttttccttcaactgaacccataagcaggactttaaaaacctgcacgttgtccccc
gttcactctccaactaaaaccagacctaaacagttcggtctctccccgaaactgcccaca
gcaaaacagttcttcgaaaaagacaacccagttcgtattctattcaacgacttattaggc
tctttcgaaaaactaataacttctgttcaaaaatcgaaagtcgagtacgtgcatagggtc
acatgctcccgtcgaacgcacaggtcatgtgacctccataaactagtcccgtcgcatcat
gatattttaggcgaagaatcaaaactcaggatgaaagtctcacgccccaacacaaatagt
gatctacaaagcaaaccacaagtaatctacccactgaaacctgattattcaactaccaaa
catgctagaacgacaagtggcaggcacgaagaaccgacttgtattatcgcaacctgtgtc
caattcctggtaaacactcttgtcaacctaagccccaattcctcatgtgtccgacatacg
cttcggacactggataaagttggtgtgtgtcagtgtcaagctgtcaccctaatagttaca
cctcttcttacacacttggagtgctggagcgataaaatgcaaaacgctatgctgggatac
gtgggcaaaattttgctctaccattttatggggagtaaaacaacacccaatagtgaaaat
ctctcgtcttttttcatcaacataccaacggcatggttgttgaaaccgatatcgttatct
actgatccgttaaaactagcgaacaagaaaggcaaaaactggagacgctcgcttcccatc
gatgtgtcttcctcatcagagtcctctgcatccgagatctcagcagaagaatccttcttc
ttgtacaatctctcgcatccctggttgtgtcttgtgatgtacaggaagcttctcgcatct
tctgatccggatctatctcttaaagtcgctcttcatctccaaaccctctccccgcatctc
ccggaggaatcaaagatgtccctctcttccctagtcctcctacccatcctctgctcttcc
tctgggatcaaatacagcctgatgcgcaaggagctctgctctacaggcgaagtcttccgg
gaagagatcctctccataatcctctgcatcctccttcggtatctcgagtcctccgacccc
tgccgagcgatcttcttacgacacggaggacttaaagcggtgaacaaaatcctctctcat
ccaaaacactcttcccaagatgcggatttttctgaccacatccgggatctggtcttccac
ctcggacgtgcgtatctgacatcagtgactattctctccccggacgtatctgttgcagta
ttctcctattacaagaagccaccccccttactcaaacaacacagcacggaacccacatcc
gataattcagtagctggcccaatgaagacatttctccgtggattttcttggggaagtgaa
aaattccgcacagacgcgcaagaacgctccacaagtcttggctctttaaggcagaaacag
gaaaacaaatcgcaaataaatcgtgacaaccagttaacctacacctcaacgagcatcgac
gagctttcagtctactataccgagctccgtaaattcgtgcgcgtcgctctagcgctttca
ggtgcctccacaaacgatcgtgctaaagaaaaggccaaaaaatcaaagaattttaacttt
gctcgcgctttaagcggcgaatcaactgactctgaccctgagtttcgatcacgccctcgt
acccgaaatctctctgaaacgtcagggtatagatccactagccctgagtccctcaatcat
tcaatctccaacgaaattcgctcaattagcagtagaagtaataactccacgctcagttac
atttctgatagcgtctcacttccaagcgacaccgatacctttgcctggcagcagttagtc
aactactggcaagtcctaggcctctctgtgcccatggataaccagatcagcacttcattt
gtagaactgaacggtttcgaggtggccctcaaacttctaactatgatttcaaccagttta
aacgagtattacctctcggaaatgaattttactttcgcaacgcaagataacacggctgca
ggcagcgttttggataaaagcatctcgtcttcttctttagagagtccaacatccaatgat
aatccgctcactgctcccaaaactcctccgaaaatcttcctcgcagaggagcactcccaa
gaggaagagatgcctttttcctcaagcccaaaagatgttgatcttcaggagccatcaact
ctcactcactcacatccgacgatcgatgtatcttcagttgatgatcttccggatgttccg
gactttggagacgcagcaacggacttgaaactggtcgaaatgaaactgaacctcttctgc
tcttgtttaagagtttgtctgttctgttcaaggagaactgaccagtttgagattgatgtt
gatgacatcatcagctcgttacgacccactttaactggaaaactctcgtccacgtatttc
ggaacccaacttttcagctccatgtttcaagctgctatcagtcctgtgtcagaaacagca
gatgttttgccaaagttaaccactgtcctacaaggcctacaacgtgtaattaccagcggt
gggtcaactacaagaagccgtacgtccacttgtcacagtcgtagcaattcagcgtcaatt
gccatcaaccttatggaggaaataaacaacctcgatgacgacaatgattatgactcggaa
tcggacgattctaccaccggagggtatgagggagactccgaacatggattgaataaaaca
cctattgctgttcctttcaaaagatggcttgatcttcctcaaacggatgggttaaggggg
tttcccaacccctcatttatgcggaataaccttgagttcacccccggccccctacttcac
cctgaactgctcttattggcggtagaactgctcggcagcaaggcagaccatcaaaacaga
aatcacgccgattcagatttggaaattctgaaagaaaaatttgctgctaatgctgaaccg
ttacggtccgttgattctgacgtccgagattgtttgattgattcggttggccgagcactg
acgcgcttggctggtttctcgaaacaaaatttagacaaaatggccaaaagtgattttgca
tctgcttgtattgaaaatttaagtgatgttctaagcagtgataaactgcattggaaaaga
caccgagatatcatattctcattatgtatgacgctaaccaagcattacatgacttctaaa
catctgcggttgattctgtcgttgtttaactcatcaagtccaccattgcaagagcttttg
acttgcctcctggacctggtcgagcagcaagagttcggacccaatttctgtctcactttt
tcttggaagaacgtgaggatggaggagccaacatccggactcccatctgattcagagtcg
gactctgagagtttaagtttggatgaaattgtccacacgatgtcctcccagaggagtttg
acagtttggagggtggcacccttgcatatgcaacttgagaatcatattatgtggccacca
cttgattctggtgtcacgatatctctatggttacgagttgggatgcttaatccacacgac
tgcggttgctataccaacagttggactgagggtcatgtgatcatggtggaatcggaagag
cgtgaccaagtctcgtcacagtcgagtccgtacgtccacttggtgtccatcggcagcaaa
caaacaatgttacaagtatggatggaaaactcaaccctaatattcagggtatgtgtggat
ccaaatgacgagaaaccagtaggtgtcctcgctcaaacggaatgtgcaaattttctgcaa
cccaaccaatggcaacatctaactatgacgtacacagaaagcagaatgcctgacaaggca
attcttggtaaagttcacctcattcttgattgcttcattgaaacggacgttattctcgag
tttaatctcccgcaagtcgcaacaaagtctggtttatcctcgtggagacaaacgaacccc
aaccctcaacttgcaatgcagaaagccacgttttttcttggacattatgacaaacttcat
gttaattatactaaatctgatgacatcacaatgacatcatcaacgatatctgtcggcaac
ataatgatttttaacttagcgacgttttcatgccagtcagcattcgctattgagcaactg
ggttctgacgcttgctgttttactgactgtttgactgacagtttaaagaccaaccccagc
atagattctaggataaggttcgttaacagcgatgccaaccccaaaataaccccagaaaga
ggggtaaccccctcaccccgactattcaaactcttaccccaaacttttaactcggacctt
atcaacgatgaagttattaccggagaaatcagaccagattttaaaacattacaggatgca
ttagtgttaacatacactccatgtgagccaatgatattccatcgtcattctgttgccgcc
cctgccacgcccacaaagaagcggaaattattccgtcgagcaaccccagactcgttaaac
ttgacccctgacccttcacccctcgtgcactctagcgagaaagtaaaagtgcgcaagccg
cacaaggagcacatcgtgccaaatgtgtactcaggccttaacagagcattaagccaggtt
ggaggcatccatgtttttttactcttgtatcccaaagtgattgaaattacatcttcactg
agtcatttgtcctccgatgcacgtgaggagcttcaagtcctcgctcttcgttcgttgctc
catctgcgcgctagcgacaccaagaggagaagagaatttcttacgagcggtgtttcctca
atgttgcagaaggtgatgacaaagagtgattgcgtggttggattccggacacttgaggag
ctaatgaactctgtttgttcagaaaccgtgattcaaagttacgcatcagttaacaacaaa
gtggaatttcagatcaacctagaaaattccggtttaatccatgaccacgaactactaacc
actttcatcctggattggaaaatttggcacaaagcaaaaaatcttgaaggtgaagaagac
ttcagtgtatggacattattgcttcaatcattggaaagccttataagagatgatcatatt
tatcaatggtttaatataaaagctcttctgcgtgctaagatggtcgaaaaattattaaac
aatattcaagaaatgttaaacgccgacgttaccccgtttcacccccacaacttatcattt
ctatggtttcggtga
DBGET
integrated database retrieval system
