Ciona intestinalis (yellow sea squirt): 113474334
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Entry
113474334 CDS
T01056
Name
(RefSeq) beta-1,3-N-acetylglucosaminyltransferase radical fringe-like
KO
K05948
fringe [EC:
2.4.1.222
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin00514
Other types of O-glycan biosynthesis
cin04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
113474334
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
113474334
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
cin01003
]
113474334
Enzymes [BR:
cin01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.222 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
113474334
Glycosyltransferases [BR:
cin01003
]
Glycan extension
O-Glycan
113474334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fringe
Motif
Other DBs
NCBI-GeneID:
113474334
NCBI-ProteinID:
XP_026690746
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All DBs
Position
7:11953..23747
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AA seq
323 aa
AA seq
DB search
MQNQHTFFGFVIFMLVLTIIYYSHLEQHVEHVGTKMFYPHPYVSRHIRGNRSYALRVEDI
FITVKTSKLFHTTRLTFIINTWFNQAKDQIFFVTDDDDIDLHLKTNGHVVNSHCGNTHEL
QDLSCKTGKEYDLFMTTNKKWWCHFDDDNYVNINALVKFLGTFNWQEDFYIGRRSVTRKF
GGVFHKKYVKFIFATGGAGVCISSALAKKMSPWCKNGEFLKTSKHLKHNDDCTLGFIITN
LLKVDLTLTKLFHSHLETLDTLNPASFSTQVTLAHGAPDNVIIINNNTTNTTVFNTDLDP
SRFYSLHCLIFPGLPMCKISSEN
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaccaacatacgttctttggttttgttatctttatgttagttttaacaataatt
tattatagtcacttagaacagcatgttgaacatgtcggaacaaaaatgttctatccgcat
ccgtacgtctcccggcatataagaggtaaccgatcatatgccttgcgtgtagaggacatt
ttcataactgtgaagacaagcaagctattccacacaactcgtctcacttttatcataaat
acttggtttaaccaggcaaaggatcaaatattctttgttactgacgatgatgacatagac
ttgcatttaaagaccaacggccatgttgttaacagtcactgcggaaatactcacgaatta
caggatctgagttgtaaaacgggtaaagaatatgatctatttatgacgacaaacaaaaag
tggtggtgtcattttgatgatgataattacgttaatattaacgcattagtaaaatttttg
ggcacattcaattggcaagaagatttttatattggacgacgaagtgtaactcgaaagttt
ggtggagtgtttcacaaaaaatatgtcaaatttatttttgccactggaggcgctggagta
tgtatttcctctgctcttgcgaaaaagatgtcgccttggtgtaaaaacggggagttttta
aaaacgtcaaaacacttaaagcataacgatgattgtacactaggattcattatcacgaat
ttattaaaagttgacctgactttaaccaagttgtttcattctcacctggaaacactggac
acattaaatccagcatcgttttcaacacaagtgacattggctcatggagctcctgacaac
gtcataattattaacaataacacgacaaacactactgtttttaacactgatttagatcca
tcacgattttattctttacactgtcttatttttccaggattacccatgtgcaaaataagc
agcgaaaactag
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