Ciona intestinalis (yellow sea squirt): 619278 Help Entry 619278            CDS       T01056                                  Name (RefSeq) thrombospondin A precursor   KO K16857   thrombospondin 1 Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin04145   Phagosome cin04148   Efferocytosis cin04350   TGF-beta signaling pathway cin04512   ECM-receptor interaction cin04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cin00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     619278   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     619278  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     619278    04148 Efferocytosis     619278   09142 Cell motility    04820 Cytoskeleton in muscle cells     619278  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cin04131]     619278   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:cin00536]     619278 Membrane trafficking [BR:cin04131]  Endocytosis   Phagocytosis    Opsonins     619278 Glycosaminoglycan binding proteins [BR:cin00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    619278 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin TSP1_CFP_C VWC TSP1_CCN Laminin_G_3 TSP1_ADAMTS cEGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  619278 NCBI-ProteinID:  NP_001029015 Ensembl:  ENSCING00000007650 UniProt:  Q5VH52 LinkDB All DBs Position 4:complement(2422239..2444049) Genome browser AA seq 1168 aa AA seqDB search MRIAWILAFLGLVAAARAVGLSAVNAFDLFSMTGISHKRSQPAYRRAITTDGSSPDHFFP AYKFKRPLGPHALVATDDQFRLLSASLARIDTFYFSANMKQRMNNVGTLISISPTVSMAQ AVNTMAIVSDAPQDRLDLFYTVGERNHVLTFTNVGIANSLKEWKNMTMEFSGYDVTLYVN CRNVGTRRLESEFYRRLDAGSSRISLATAYENKDDFKGSLQNVRFRFGSRVEANPMLCDS QSTPSNIESNRSEFDPEFDVAPSRNAGPSHHDNVLPGSNTMARQFVLQVVQDSCELTCRP PQGAKRPDDLEVFFSCMDATGMHKNGERWNVDDCVSCVCDGGHRLCSNQTCPLLHCLNVT RVPGECCPKCQAETDGFSAWSSWSECSVTCGIGSQTRGRSCDRANFPCNGPTLENRNCLR DPCKRRRDGGWSFWTRWAPCSVTCGRGRSTRIRECNAPIPELDGEECLGPDRQTKDCREA PCAVNGGWGTWSPWKRCSVSCGTGFRTRKRKCNNPKPRYGGKACPGDKKEVGQCNTQNCP VDGCLASPCFGGVKCTSYDDGSFTCGSCPAGTQGDGINCQDIDECTLVADACFHYQGVHR CQNHFPGYSCLPCPSGYRGDVQSGVGVIHARAHKQECVMSNPCTDGANPCPENAECIFLG KTVSPPFICKCRPGYASCSHCDGLICADDTDLDGWADNEIVCPGSNTSVTCHEDNCPRLP NSGQEDSDEDGEGDACDRDDDNDGIYDEQDNCQFIYNPYQSDVDRDGVGDMCDNCVHDRN ADQKDTDGNGEGDACSLDIDGDSIENIFDNCVYVYNFDQLDSDMDGVGDACDNCPLVHNP SQEDRDSDKVGDSCDSNLDVDEDGIQNNLDNCPYIANANQADHDNDGLGDACDPDDDDDG IPDDRDNCRLVVNPSQLDTDGNGRGDACEGDFDGDNIMDADDACPLNNKISVTDFRSFDM IALDPEGIAQIDPNWVVRNKGKELIQTKNCDPGLAIGMDRFEAVDFSGTFFVNTEKDDDY AGFVFGYQSSSKFYVVMWKQVSQTYWKNYPSRAHGYSAIQVKVVNSTSGTGEALRNALWH TGDTKNEVRTLWYDDMQQGWRDYTAYRWTLQHRPETGFIRVTMYEGKDLLVDSGALYDKT FAGGRIGFFIFSQEMVFFSDMEYMCKDT NT seq 3507 nt NT seq  +upstreamnt  +downstreamnt atgcgaattgcttggattctcgcttttctaggactcgtcgcagccgctcgagcggtcggc ctgtcggcggtaaatgctttcgacctcttttcaatgaccggcatctcgcataagagatcc caacctgcatacagacgagctataactacggacggaagcagtccagatcatttctttccc gcatacaaattcaagaggcctctcggaccacatgctctggtggcaaccgacgaccaattc cggcttctttcagcgtcgctggctcgcattgacactttctacttcagcgctaatatgaag cagagaatgaacaacgtcggcacccttattagcatctccccaacagtgagcatggcacaa gcggtcaatactatggcgatcgttagtgatgccccacaagacagacttgatctcttttac accgttggtgaacggaatcatgttttgaccttcacaaatgtgggtatcgccaattcactg aaagaatggaaaaacatgaccatggagttcagcggttacgatgtgacgctgtacgttaac tgccgcaacgttggcacacggcgattggagagcgagttctacaggcgtctggatgctggc agcagccgaatcagtctcgcaactgcctatgaaaacaaggacgattttaagggatctctt cagaacgttcgatttcgatttggttcgagagttgaagccaaccctatgctctgcgactcg caatctacgccaagcaacattgaaagcaaccgttcagagtttgacccagagttcgatgta gcgccatcccgcaacgcgggtccttctcaccacgacaacgttctgcctggcagtaatacc atggcgcgccagtttgtgctgcaggtcgtccaagattcttgcgagctgacatgccgcccg ccgcaaggagcgaaacggccggacgaccttgaggtgttcttctcttgcatggatgccaca ggcatgcacaagaacggagagagatggaacgttgacgactgcgtgtcttgcgtatgcgat ggtggccaccggctatgttcaaaccaaacctgccctcttctacactgcctcaatgtgacg agagttcccggagaatgctgcccgaaatgtcaagctgaaactgatgggttttctgcatgg tcaagctggtcggaatgtagcgttacttgcggaattggaagccagacaagaggccgatct tgcgacagagctaactttccatgcaatggaccaacgttggaaaaccgaaactgccttaga gacccatgtaaacggcgccgtgatggaggttggtcgttctggaccagatgggctccatgc agtgtaacttgcggtagaggcagatccaccagaatccgtgaatgtaatgcaccaattcca gagttggacggtgaagaatgtcttggacctgacagacaaaccaaagactgcagagaagcg ccttgtgcagttaatggcggatggggtacctggtcaccatggaaacgttgtagtgtttca tgcggaacagggttccgcacgcgaaagcgaaagtgtaacaacccgaaaccgaggtacggc ggaaaggcgtgcccgggagacaagaaggaagtcggccaatgcaacacacagaattgccca gttgacggttgtttggcgagcccttgcttcggtggtgtgaaatgcacttcgtatgatgat ggtagtttcacttgtggttcatgccccgctggaactcaaggtgatggcataaactgccag gacattgacgagtgcactctggttgccgacgcctgcttccactatcaaggcgtgcataga tgccagaaccacttcccaggctattcgtgtcttccctgcccgtccggatatagaggcgac gttcagtctggagtcggcgtcattcacgcccgtgcccacaaacaagaatgcgtcatgtcc aatccatgcacagacggggcgaacccctgcccagaaaacgcggaatgcatattcctcggc aagaccgtcagcccaccattcatttgcaagtgtcgaccaggctacgcgtcatgctcacat tgcgatggtttgatttgtgcagatgataccgacttagatggctgggcagacaacgaaatc gtatgcccaggcagcaacacttcagttacatgccacgaggataactgccctcgactgccg aatagcggacaagaagattcggacgaagatggcgaaggcgatgcttgcgacagagatgac gacaatgatggcatatatgacgaacaggataactgtcagttcatatacaacccgtaccaa tctgatgtcgaccgagacggtgttggagacatgtgcgataactgcgtgcatgataggaat gcagaccaaaaggataccgatggtaacggcgaaggggacgcttgctctcttgatattgac ggcgactccatcgagaacatattcgacaactgtgtttacgtttacaattttgatcaactc gatagcgacatggatggagttggtgatgcatgtgacaactgtcctctggtacacaacccg tcacaggaggaccgagattccgacaaagttggcgacagttgcgactcaaacttagacgtc gatgaagatggaatacaaaacaatttagacaactgcccatacattgcaaatgccaaccaa gcagatcacgataacgacggtttgggcgacgcgtgtgatccagatgacgacgacgatggt atcccagatgaccgagataactgcagattggttgtcaacccaagccaactcgatactgac ggtaacggcagaggcgacgcttgtgagggcgactttgatggtgataatatcatggatgcc gacgatgcttgtcctttgaataacaagataagtgtaactgacttcaggagcttcgatatg attgctcttgacccagaaggtattgcacaaattgatcctaactgggttgtgaggaacaag ggtaaagagctcattcagaccaaaaactgcgaccctggactcgccatcggaatggaccgg tttgaggcggttgattttagcggaactttctttgtcaacactgaaaaagatgacgattac gcgggttttgttttcggatatcaatcttccagtaaattctacgtagtcatgtggaagcaa gtatctcaaacctactggaaaaactacccatcacgtgcccacggatacagtgccatacaa gtcaaggttgttaactcaacttcaggaacaggcgaagctcttagaaacgcactttggcac accggggacacgaaaaacgaggtacgaactctttggtacgatgatatgcagcagggctgg agggattataccgcttacagatggaccttacaacacagaccagaaactggtttcatcaga gtgacaatgtacgagggaaaagatcttttggttgactccggtgcgttatacgataaaaca tttgccgggggaagaattggattctttattttctcgcaagagatggtgtttttctcggac atggaatacatgtgtaaagacacgtaa

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