Ciona intestinalis (yellow sea squirt): 778670
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Entry
778670 CDS
T01056
Name
(RefSeq) oxysterols receptor LXR-beta isoform X1
KO
K08536
liver X receptor alpha
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
778670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778670
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cin03310
]
778670
Transcription factors [BR:
cin03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
778670
Nuclear receptors [BR:
cin03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
778670
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
778670
NCBI-ProteinID:
XP_002120859
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Position
2:complement(6562311..6571760)
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AA seq
818 aa
AA seq
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MTDATINTSITVDINGNKISEYSNNGTPGAKQDSFTNQLNCVNATSVQMTTNPAPVLQMP
LGMPLTGVTTVPVALCGVNGAANKDTPATNQPPAMMGQPGAIIGQPASFMAQPAMQPGGI
FLINMPTGTQAHNITAIPQIALPTNGNPHQAISSTQQTVNQAPATTVQGNYAQQTTSSQQ
GYGFNMPQFMQANTTVAAPTAAYMLVPIQQVPQNQQHIGQQFTSPPATQPQPNVHPQHTQ
QPQQPHPSPYQVPPSPQTPQTQYSIPPSPQNLQNPQTPQNPQEIPQYQPIPTQPFITKLD
QGNPQVSTQGTQPSPSVAINDPHISSSVQDSGLNPVILQELQRLQALASTSSSYSATDIA
KILRTISDIASNPKKEAESPSTSMTQQIPTNPISGPSTPQENKLPPSPANTFITSTIFTE
ALSPGSQSRSSSVSSIPDPNIQHIQKVPEAPVREKRKKGPAPKLDGNEVCLICGDKASGY
HYGVLSCEGCKGFFRRCIIKTPNFKCKNNGQCQMDTYMRRKCQKCRLDKCRAAGMKDETV
LTEVQSKAKRMKREKDNSTFVASPHHFAPNLSFNGEPIPSLTSHQRNLVEMLQANEARFQ
WPTQEAVAKVTPWVESGDSHRCRASRFAHFTELAILIVQLVVEFTKQLPGFLTVSREDQI
LLLKACTIEVMLLRAAKQYDKKSKAINFLNGKFYDKSSFYRAGMQVEFVDPIFDFCNSMA
QLGLNEAEYALLVAINTFSADRPNIKDMHKVEAVQNSYVELLRVYLKIHHPSDPLMFPRT
LMKLVELRTLNNYHSEQIFALKVQDKQLPPLLAEIWDM
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgacggatgcgactatcaatacatctataacagtggatattaatggaaataaaatatca
gaatactcaaataatggaacacctggtgctaagcaagattcgttcacaaaccaacttaat
tgtgtgaatgcaacctctgttcaaatgaccacaaatccagctcctgtgttacaaatgcct
cttggaatgcccttgactggagtaactactgtaccagtggcattatgtggtgttaacggt
gctgcaaacaaagatacgcccgctaccaatcaaccccctgcaatgatgggtcaacccggt
gctattattggacaacctgctagttttatggcccagcctgcaatgcaacctggtggcatt
ttcctgataaacatgcctacagggacccaagctcataatataacagcaattccacaaata
gcattaccaaccaatggaaatccacaccaagccataagcagcactcaacaaacagtaaac
caggcacctgcaaccactgtgcaaggaaactatgcacaacaaaccacatcaagtcaacaa
ggttatggattcaatatgcctcagttcatgcaagctaacactacagtggctgccccaaca
gccgcgtatatgcttgtaccaatacagcaggtaccacaaaaccaacagcatattggacag
caattcacgtctccacctgccacccaaccccaacctaatgttcacccccaacatacccag
caaccccaacaaccccacccttctccataccaagtacccccatcaccccaaaccccacaa
actcagtacagcatacccccttctccacaaaacctgcaaaacccccagaccccccaaaac
ccccaagaaatcccccaataccaacccatacccacacaacccttcatcacgaagctagac
caagggaacccgcaagtttccacccaaggaacccaaccaagccccagtgtggcaatcaac
gacccccatatatcatccagtgtacaagactctggattaaatcccgtaattttacaagaa
ctgcagcgcttgcaagctctagcatccacctcttcaagttacagcgcgacagacatcgct
aaaatcttacggacaatctcggacattgcaagtaacccgaaaaaagaagctgagtcacca
tcaacgagcatgacgcagcaaattccaacgaatccaatatcaggaccatccacaccacag
gagaacaaactcccaccttcacctgctaatacattcataacaagcactatattcactgag
gcactttcacctggttcccagtcccgttcatcaagtgtttcaagtattcctgacccaaac
attcagcatatacagaaagttcccgaagctcctgtccgtgagaaaaggaagaagggaccc
gctcctaaacttgatggaaacgaagtttgtttgatatgtggagataaagcttctggatat
cattatggagtgcttagttgtgagggttgcaaaggttttttccgccgttgcatcatcaaa
acaccgaactttaaatgcaaaaataacggccagtgtcagatggatacttacatgcgaagg
aaatgtcagaagtgtcggttggacaaatgtcgcgctgccggaatgaaagatgaaacagta
cttaccgaggtacagagcaaagctaagaggatgaaacgtgaaaaagacaattccacattc
gtagcttcacctcatcacttcgctcctaacctttcatttaacggagaacccatacccagt
ctcacttctcaccagcgcaacctagtggaaatgttgcaagccaacgaggcacgatttcaa
tggcctacgcaagaagctgttgccaaggttacgccatgggttgaaagtggagactcacat
cgttgtagagcttcacggttcgctcacttcactgaacttgctattctaattgtacaactt
gtagtggagtttactaagcaactaccagggtttcttacagtttcaagggaggaccagatc
ctactgcttaaagcatgcactatagaagtgatgttactgagagctgcaaaacaatatgat
aaaaaatctaaagcaataaattttctcaatggaaaattttatgataaatcaagtttctac
agagcaggaatgcaggttgaatttgttgatcctatatttgatttctgcaacagtatggct
caacttggtcttaatgaggcagaatatgctctgctggttgctattaatactttctctgca
gatcgtccaaacataaaagacatgcacaaagtagaggcggtgcagaattcttatgttgag
ctgttgagggtttatcttaagatacatcatccttctgatcctttaatgtttccgagaact
ttaatgaaattagttgagctacgaaccttgaataattatcatagtgaacaaatatttgct
ttaaaagttcaagacaagcaattgcctcctttattagcagaaatatgggatatgtaa
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