Ciona intestinalis (yellow sea squirt): 778703
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Entry
778703 CDS
T01056
Symbol
nr41/42/43
Name
(RefSeq) nuclear receptor
KO
K08558
nuclear receptor subfamily 4 group A member 2
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778703 (nr41/42/43)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cin03310
]
778703 (nr41/42/43)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Zinc finger
Cys4 nerve growth factor IB-like
778703 (nr41/42/43)
Nuclear receptors [BR:
cin03310
]
4. Nerve growth factor IB like
4A. Nerve growth factor IB like receptor
778703 (nr41/42/43)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
GEP5
Motif
Other DBs
NCBI-GeneID:
778703
NCBI-ProteinID:
NP_001071779
Ensembl:
ENSCING00000019110
UniProt:
Q4H333
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All DBs
Position
9:3338338..3343916
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AA seq
1054 aa
AA seq
DB search
MSTLIMPISCFGSAASLGVPSLHKTDESESLQEKEISLTFIKQRPLATEENHYKSDYFSE
ENILSQSLPSFEPIVPGFMTSSRYSTSIGTTSPGSSTSSNPESISPVISSQNNTDIQESL
TQTEPMATTSFLNCPTSWNNESYSNDFDAHASNCPDNSDAFSASPVSSLATTIVPVHGYG
DLNSLSPHPSSPNLHNAHDSNQRVTPNETPMSAASPSHTVHFNSTAYGSDPTGNEGMMDI
LPIDQSERRQSSSVMSVAVFHIPNMHETTPTYSNVGDENQVSSTQFYGKSPLHSLYSKRS
APSSEYKYSRKLSCTVDPNTYNFSNVDPSSPTEVSNASRNRHYRHHSYSECTKRADMVSS
SPSSPDDIFMSNQHKRINNQEFFSAESCVPRSNYDETDIGLYSSYSGMNTSVDIKPFRLN
GPSHINTFKKTVSSDHSRSTAKEHMILEQGHGISNSFANYPSSALEQSPHSASSPVFEQI
SCPTHSLATSKPQMSGFTDNSQVADLEKQGFTSMLNSPLQSTNNSFHEISHSPTHQRIQN
SPTDLSVSSPRLGAQMDLNIFHNNQSRIAGDELRLIRDVAPVSQHTASPGIGTMAGLLST
YRPGDRDQFQNLTALSGQEQALGHSSVPLINQTHPITLDSTKPINGDTLYSSGLSYNGQM
YLALPNSTGNHFHPFRTQYAGTERHHPYQSHNERLVVGGSMTPSTNVRPSSEGLCAVCGD
NAACQHYGVRTCEGCKGFFKRTVQKKSTYVCLANRNCPVDKRRRNRCQFCRFEKCLAVGM
VKEVVRTDHLKGRRGRLPSKPKGPKDPVAPPSPPVSFITSLVRAHVDTNPAISNTDTSKY
RPPGIAPCTPPLRVVDEAINFYELLSACQAVIRQWAEKIPGFCNLCQEDQTNLVENSFLD
IFVLRLAYRSEIQEGKLVFCNGLALHRDQLYGSFGEWIDSILSFACSLADMNVDISSFSC
LLGLLLFREPRGVREPKKVEELLGLCIESLKEHVTKSSVTADRPNYFAKLLAILPELNAL
AKMGGRRIQRHSIESPGVRVPHCLQRNLSTNMLL
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgtccactctcattatgccaatcagctgctttgggtctgctgcaagtttaggagttcca
tctttacacaaaaccgacgaatccgaatctcttcaagaaaaggaaatcagcttgacgttt
atcaaacagcgcccactggcgacggaggaaaaccattacaaaagtgactacttttccgaa
gaaaacattctttcgcaatcgttaccctcatttgaaccaatcgttcctggatttatgacg
tcatctcgatattctacctctattggaacgacgtcacctggatcgagcacgtcatcaaac
ccagaatctatttcccctgttatatcatctcaaaataacacggatatacaggaatcgctc
actcaaaccgaaccaatggcaaccacttcgttcttaaactgtcccaccagttggaataac
gagtcttattcaaacgacttcgatgcccacgcctcgaattgtcccgacaacagcgatgct
ttttcagcatccccagtcagcagtcttgctacgactattgtaccggttcatgggtacgga
gatctgaattcactatcgccgcacccaagctcgccaaatttacataacgctcatgattct
aaccaacgagtcacgccgaacgagaccccgatgtctgctgcttctccatcacacacggtt
cacttcaacagcaccgcttatggaagcgacccaactggaaacgaaggcatgatggacatt
ttgcccatcgaccaatcggagcgacgacagagttctagtgtcatgtcagttgcggtgttt
cacatcccgaatatgcatgaaacaactcccacgtactccaacgtcggtgacgaaaatcaa
gtcagttcgacccagttttacgggaaatcgcctctgcattcattatactcaaagcggtct
gctccgtcaagcgaatataaatattcacgaaaattaagctgtactgtggatcctaacacg
tacaacttttccaatgttgatcccagtagcccaactgaagtttcgaatgcatcccggaac
cgtcattaccggcatcattcctacagcgaatgtactaaaagagccgacatggtttcgtct
tcgccgagttcgccagatgatatttttatgtccaaccagcataaacgaataaacaaccaa
gaattcttctctgccgaaagctgtgtacctcgctcaaattacgatgaaaccgatatcggt
ctctacagttcgtattcgggtatgaacacttctgttgacatcaaaccgttcagactaaac
ggtccgtctcatatcaacacattcaaaaagactgtttcgagcgatcatagccgaagcact
gccaaagagcacatgatattggaacaaggccatgggattagcaattcatttgcaaattat
ccgtcctcagctttggagcagtcaccacattctgccagtagccctgtttttgaacagatt
agttgtccgacccattcgcttgctacttccaagccacaaatgtccggatttaccgacaac
agccaagttgcggatctcgaaaagcaaggtttcacttccatgttgaactcgccgctccaa
tcaacaaacaattcgtttcatgaaataagtcattccccgacacaccagcgaattcaaaac
agcccaaccgatctttcggtcagcagcccgcgactgggcgcacaaatggatttaaacatt
ttccataacaaccaatctagaattgctggggacgagttaaggttgataagagatgtagcg
cccgtatcccagcacacagcctcgcccggtatcggtacgatggcaggattactttcaacg
tatcgtcccggagatcgggatcaatttcaaaatctaactgctctttccggccaagaacaa
gcgctcggtcattccagtgtaccactgataaatcagacccaccctataaccttggattct
actaagccaataaatggagatacattatactctagtggactttcgtacaacggtcaaatg
tacctcgctcttcccaactcaactgggaaccatttccacccctttcgcacgcaatacgct
ggaacagaaagacaccatccataccaaagtcacaacgaacgactggtggtcggtggttct
atgacgccttccactaacgttcgaccgtccagtgagggcttatgtgccgtatgtggcgac
aacgctgcttgccagcattacggagttcgaacctgcgaaggctgcaaaggattttttaag
agaaccgtccagaaaaagtcaacgtatgtatgtttggcaaaccgaaactgtcccgtcgac
aaacggagaagaaaccgttgtcagttttgccgattcgaaaaatgccttgccgttggcatg
gtcaaagaagtggttcgcaccgaccatctgaaaggacgcagaggaagattgccgtccaaa
ccaaagggtccaaaagatccggttgcccctccctctccccctgttagtttcatcacatct
ttggtacgagcacatgtagatacgaatccagctatttcaaacacagacaccagcaagtac
cggccaccgggaatcgcaccttgtacccctccgcttcgagtcgttgacgaagcaatcaac
ttctacgagttactgtcagcatgtcaagcagtaatacgccagtgggcagaaaaaattccc
ggattctgtaatctttgtcaagaggatcaaaccaatctcgttgaaaattccttccttgat
atttttgtgctacgtttagcttacagatccgaaatacaagaagggaaactggtattttgc
aacggacttgctttacaccgtgatcagctttacggaagctttggggagtggatcgactcc
attttgtcgtttgcgtgttctctggcagacatgaatgttgacatttcctcgttcagctgt
ttgctcggtttactcttatttagagagccacgcggtgtacgagaacctaaaaaagtggaa
gagcttcttggtttgtgcattgaaagtctcaaagaacacgttaccaagagttctgtgacc
gccgaccgtccaaattacttcgcaaagcttctcgctattttacccgaactcaacgccctc
gcaaaaatgggcggacgaagaatccaacgacacagtatcgagtctccaggagtccgtgta
ccgcactgcttacagcgcaatctttctacaaacatgctactctaa
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