Ciona intestinalis (yellow sea squirt): 780709
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Entry
780709 CDS
T01056
Symbol
fxr
Name
(RefSeq) nuclear receptor
KO
K08537
farnesoid X receptor
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
780709 (fxr)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cin03310
]
780709 (fxr)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
780709 (fxr)
Nuclear receptors [BR:
cin03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
780709 (fxr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
780709
NCBI-ProteinID:
NP_001087206
Ensembl:
ENSCING00000003634
UniProt:
Q4H3G2
Q4H3G1
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All DBs
Position
2:complement(5033575..5041558)
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AA seq
294 aa
AA seq
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MDMYTRRKCPECRLRKCRAVGMLEECLLTEIQCKSKRRSRKVKTIQEDDETKESVPNPIP
PPKPAVKSPPEPDETDLLIELVGKSFSDYRNNPEIVNRWECFYELSTKTPPNLCEIATIH
VQVLVEFTKKLPGFMRLDSHDQIALLKGCVVQAMLLRNSCGYNKVNRFLDLKRVVRDSGI
KEDHIRTLTDFFDNVAKLQMDETEYGLLIAIIVFDSDHTDLENRLTIDKYRDRYLSALSR
YSEAREPRRPQIFAKILSLLTEMRTLYHTHAKMVLDWKQREQLTPLLCEIWDMR
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggacatgtacacacgtcgaaaatgtcctgaatgtcgattaagaaaatgcagggctgtt
gggatgttagaagaatgtttgttgactgaaatccaatgcaaatcaaaaagaagaagtagg
aaagtgaaaacaattcaagaagatgatgaaacaaaagaaagtgtaccgaatccgatccca
ccacccaaacccgcagttaaatctccaccagaaccagatgaaactgatttattaattgaa
ttggttggaaaaagtttctcagattaccggaataatcctgagatagtaaatcgttgggaa
tgtttttacgaattgtcaacgaaaacgcctccgaatctttgtgaaatcgctaccattcac
gtacaagtgttagtagagttcaccaagaagttaccaggtttcatgcgacttgactcacac
gaccagatagctttactgaaaggttgtgttgtgcaagcaatgcttctacgaaactcatgt
ggttacaataaggttaacagattcctggatctaaaacgtgttgtacgagactcaggtata
aaggaagaccatattcgaacgctcactgatttttttgacaatgttgcaaaacttcaaatg
gatgaaaccgaatacggcttgcttattgccatcattgtgtttgactccgatcacaccgac
cttgagaacagacttaccattgacaaatatagggaccggtacctgtccgctctctcgcgt
tacagcgaggcccgtgagccgcgacgtcctcagatcttcgcaaaaatcctctctcttctt
acagaaatgcgaacactgtatcacacccacgctaaaatggtcttggattggaaacagcgg
gaacagctgacacctttgctttgtgagatttgggatatgcggtga
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