Clostridium intestinale: HZF06_19985
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Entry
HZF06_19985 CDS
T08934
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cint
Clostridium intestinale
Pathway
cint03030
DNA replication
cint03410
Base excision repair
cint03420
Nucleotide excision repair
cint03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cint00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HZF06_19985 (ligA)
03410 Base excision repair
HZF06_19985 (ligA)
03420 Nucleotide excision repair
HZF06_19985 (ligA)
03430 Mismatch repair
HZF06_19985 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cint03032
]
HZF06_19985 (ligA)
03400 DNA repair and recombination proteins [BR:
cint03400
]
HZF06_19985 (ligA)
Enzymes [BR:
cint01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HZF06_19985 (ligA)
DNA replication proteins [BR:
cint03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HZF06_19985 (ligA)
DNA repair and recombination proteins [BR:
cint03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HZF06_19985 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HZF06_19985 (ligA)
MMR (mismatch excision repair)
DNA ligase
HZF06_19985 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HZF06_19985 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
RNA_ligase
PADR1_Zn_ribbon
A2L_zn_ribbon
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
QLY79297
UniProt:
A0A7D6VRK4
LinkDB
All DBs
Position
complement(3984594..3986582)
Genome browser
AA seq
662 aa
AA seq
DB search
MDNKERMEQLATDLNKYAYEYYVLGNPSIADKDYDEKYYELVELEKQEGVILPYSPTQRV
GDVVLPEFNKYVHKGRLWSLDKAQISTELQDWHNRNVKFINEYNKNNSDKLPEISYIITK
KFDGLTLNLTYNNDGILQVAATRGTGSIGEDVTAQAKTIKTIPLKIDNHNVFEIHGEAIM
TKEAFDNYNSSAAVPLKNLRNGAAGALRNLNVKETAKRNLSAFFYDIGYNEGTQFTTYEE
MLTFIKDKGFPIDSYMKRCTTLEEINKEIEYIKSIRFDLNYDIDGAVIAINDMRTRELLG
YTIKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVTVKRATLNNM
DDVNKKGVKIGAEVFVRRSNDVIPEIMGVVESSLENTQEITPPTKCPYCDGNVVLNGAHY
FCENTLSCKPQLVKTIVHFASREAMNIEGFSEKTAEQLFEKLDIKSISDLYRLNKEDLLS
LEKFKEKKATNLLNAVEKSKDCELYAFIYSLGIPNVGVKTSKDLVKRFKTLDNIIKANLE
ELLEVPDIGGIVAECIVGFFKEEQVINTINDLLSLGVKPRYEQIEVSENIFEGKTVVVTG
TLENYSRTSIKDKLESLGAKVSGSVSKKTDYVIAGEEAGSKLTKAQELGVTVLSEKEFED
MI
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggataacaaggaaagaatggagcaattagcaacggatttaaataaatatgcctatgaa
tattatgtattaggtaatccctccattgcagataaagattacgacgagaagtattatgaa
ttagttgagctagagaaacaggaaggtgtaatccttccttattcccctacacaaagagtg
ggagatgtagttcttcctgagtttaataagtatgttcataaagggaggctgtggagttta
gataaggctcaaatttctacagaattacaagattggcataatagaaatgtaaagtttatt
aatgaatacaataaaaataattctgataagcttccagagataagttatataattactaaa
aagtttgatggtttaactcttaatttaacttataataatgatggaattcttcaggtagct
gcaactcgtggtacaggatctataggcgaggatgtaactgcacaagccaaaactataaaa
actattccactaaaaatagataatcataacgtgtttgagattcatggggaagctataatg
accaaggaagctttcgataactacaatagtagtgctgctgtacctcttaagaatttaaga
aatggagctgctggagctttaagaaatttaaatgtcaaagaaactgctaagagaaatcta
tctgccttcttttatgatattggatataatgaaggaactcagttcactacatatgaagag
atgttaacttttataaaagataagggatttcctatagattcttatatgaaacgttgcaca
actttagaggaaataaataaagaaatagaatacattaaatccataagatttgatttgaat
tatgatatagatggtgcagtaattgcaattaatgacatgagaactagggagcttttagga
tatactataaaatttcctaaatgggctatagcatataaatttgaagctcaagaggcaact
acgaagttattagatgtagaatggaatgttggaagaagtggaagagtttctcctactgca
atattagaacctgttgagttagctggtgtaacagttaaaagagcaacattaaataatatg
gatgatgttaataaaaaaggtgtaaaaataggagcagaagtatttgtaagaaggagtaat
gatgttattccagagattatgggagtagttgagagctctttagaaaatactcaggaaata
actccgcctactaaatgtccttattgtgatggaaatgttgttttaaatggtgcacattat
ttttgtgaaaacactctttcttgtaaacctcagcttgtaaaaaccatagttcattttgca
tcaagagaagctatgaatatagaaggcttttcagagaaaacagctgaacaattatttgaa
aagttagatattaagtctatatcagatttatatagattaaataaagaagatttattatcg
ctagagaagtttaaagaaaagaaggctactaatcttttaaatgcagtagaaaagagtaaa
gactgcgagctttatgcatttatatattcacttggaatacctaatgtaggtgttaaaacc
tcaaaggatttagtgaagagatttaaaaccttagataatataataaaggcaaatctggaa
gagttacttgaggtgcctgatattggcggaatagttgcagaatgtatagtagggttcttt
aaagaggagcaagtaataaatactataaatgatttattgagtctaggagtaaaacctagg
tatgagcagattgaggtatcagaaaatatttttgagggtaaaactgttgtagttactgga
acattagagaattactcaagaacttctattaaagataaacttgagtcactaggggcaaag
gtatcaggaagtgtaagtaagaaaacggattatgtgatagctggagaagaggctggatct
aaacttacaaaggctcaagaactaggtgtaacagtattatctgagaaagagtttgaggat
atgatatga
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