Citrobacter sp. TBCP-5362: FD428_00390
Help
Entry
FD428_00390 CDS
T10692
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ciq Citrobacter sp. TBCP-5362
Pathway
ciq03030
DNA replication
ciq03410
Base excision repair
ciq03420
Nucleotide excision repair
ciq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ciq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FD428_00390 (ligB)
03410 Base excision repair
FD428_00390 (ligB)
03420 Nucleotide excision repair
FD428_00390 (ligB)
03430 Mismatch repair
FD428_00390 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ciq03032
]
FD428_00390 (ligB)
03400 DNA repair and recombination proteins [BR:
ciq03400
]
FD428_00390 (ligB)
Enzymes [BR:
ciq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FD428_00390 (ligB)
DNA replication proteins [BR:
ciq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FD428_00390 (ligB)
DNA repair and recombination proteins [BR:
ciq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FD428_00390 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FD428_00390 (ligB)
MMR (mismatch excision repair)
DNA ligase
FD428_00390 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FD428_00390 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QCQ69546
LinkDB
All DBs
Position
84723..86405
Genome browser
AA seq
560 aa
AA seq
DB search
MRRGKSIVLSLLLWHFPVWAACPDWSPARANDEIARLQQQLAQWNDSYWQQGVSAVDDSV
YDQLSAQLVQWQRCFGGDTGAELAPPVSGSLPHPVPHTGVRKLADKQAVQQWMRKRSDLW
VQPKVDGVAVTLVYRDGRLVSAISRGSGLKGEDWTQKVRLIPAVPQSTKGALANSTLQGE
IFLLRDNHIQRQMGGMNARSKVAGMMMRQNNTSSLQSLSVFIWAWPDGPATMPERLRQLS
GAGFGFAQQYSQPVKSADDVERVRTAWWTTGLPFVTDGVVVRTGKEPEARHWMPGQGDWL
VAWKYPPVAKVAEVTGVQFAVGKSGKISVVASLAPVMLDDKRVKRVNVGSVRRWEEWDIV
PGDHILVSLAGQGIPRIDKVVWRSTQRDKPAPPGNRYNALTCFYATEVCQEQFIARLVWL
GSKEALEVDGMGEAGWRVLHQAHRFEHIFSWLALTQEQLQATPGFSKEKSKQLWHQFNLV
RHRPFIRWVMAMGIPLTQGALKASGDRSWGPLLARTAEYWQQLPATGEGRARRVIQWRDN
PEIRALGNWLAARHINGFSP
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgagaagagggaaaagtatcgtgctgagtctgttgctgtggcatttcccggtatgggcg
gcttgccctgactggtcgccagccagagcgaatgacgaaatcgcccggctacagcagcag
ctcgcccagtggaacgacagttactggcagcagggggttagtgcggtagacgatagtgtt
tacgatcagctcagcgcgcaattggtgcaatggcaacgctgctttggcggtgataccggg
gcagaactggcgccgccagtgagcggctcattgccccatcctgttccgcatacgggtgtg
cgaaagcttgcggacaaacaggcggtgcagcagtggatgcgtaagcgcagcgatttgtgg
gtgcaaccgaaagtggatggagtggcggttactctcgtataccgggatgggcgcctggtc
agcgcgattagccggggaagcgggcttaaaggcgaggactggacgcagaaggtgcgttta
atacccgcagtaccgcaaagcacaaaaggcgcgcttgccaatagcacgttgcagggtgag
atttttttgctgcgcgacaaccatattcagcgacaaatgggaggaatgaatgcccgctcg
aaggtcgccggaatgatgatgcgccagaataacacctcgtcgctccagtcgctgtctgtt
ttcatctgggcatggcctgatggcccggcaacgatgcctgagcgcttgcgtcaactgtcc
ggggcaggatttggctttgcacaacaatattctcaaccggtgaaaagcgctgatgatgtt
gaacgcgtgcgtacagcatggtggacaacgggattaccgttcgttaccgatggagtcgtg
gtaagaacgggtaaagaacctgaggccagacactggatgcccgggcagggagactggctg
gttgcctggaagtatcctccggtcgcaaaagtagctgaagtcaccggggttcagtttgct
gtcggcaagagcgggaaaatctcggttgtggcgtcgcttgcgccagtgatgctggatgat
aaacgggtgaagcgtgtgaatgtagggtctgtcaggcgctgggaggagtgggacattgtg
ccaggtgaccacattcttgtcagccttgccggacaggggattccgcgtattgataaggtt
gtctggcgtagcactcaacgggataagcccgcaccgccggggaatcgctataacgcatta
acctgtttttatgcgactgaggtatgccaggagcagttcatcgccaggctggtctggctg
gggtcgaaggaggcgctggaggttgacgggatgggggaagcaggatggcgtgtgcttcac
caggcgcatcgtttcgagcatattttctcctggctcgcgttaacgcaggaacaactacag
gcgacacctgggtttagtaaagaaaaaagcaagcagttgtggcatcagtttaacctggtg
cggcatcggccatttatccgctgggtgatggcgatgggcataccgttaacgcagggggcg
cttaaggccagcggcgatcgttcatgggggccgttactggcacgcacggcagaatactgg
caacagcttccggcgacaggggaggggcgcgccaggcgggtcatccagtggcgggataac
ccggaaatacgggcactgggcaactggctggctgcccggcatattaacggctttagccct
tag
DBGET
integrated database retrieval system
