Citrobacter sp. TBCP-5362: FD428_06465
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Entry
FD428_06465 CDS
T10692
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ciq Citrobacter sp. TBCP-5362
Pathway
ciq03030
DNA replication
ciq03410
Base excision repair
ciq03420
Nucleotide excision repair
ciq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ciq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FD428_06465 (ligA)
03410 Base excision repair
FD428_06465 (ligA)
03420 Nucleotide excision repair
FD428_06465 (ligA)
03430 Mismatch repair
FD428_06465 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ciq03032
]
FD428_06465 (ligA)
03400 DNA repair and recombination proteins [BR:
ciq03400
]
FD428_06465 (ligA)
Enzymes [BR:
ciq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FD428_06465 (ligA)
DNA replication proteins [BR:
ciq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FD428_06465 (ligA)
DNA repair and recombination proteins [BR:
ciq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FD428_06465 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FD428_06465 (ligA)
MMR (mismatch excision repair)
DNA ligase
FD428_06465 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FD428_06465 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
Prok-E2_C
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QCQ70663
LinkDB
All DBs
Position
1332120..1334135
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPDLITPDSPSQ
RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNSDKLTWCCELKLDGLA
VSILYENGVLISAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSDRVTLCDSPEAVLDFYHKVEEDRPTLGFDIDGVVIKVNSMALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVEFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEA
ASIDELQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGIHWPAPIVVNADEIDSPFAG
KTIVLTGSLSLMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVI
DEAEMLRLLGV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaaccacgcttcgccatcatgagtat
ctttaccatgtgatggatgcgccggagatcccggacgctgagtatgaccgtctgatgcgc
gaacttcgtgagctggaagcgcagcatccagatttaattacgccggactccccgagccaa
cgcgtcggagcggcgccgctggcggcgttcagccagattcgccacgaagtgcccatgttg
tcgctggacaacgtgtttgatgaagagagttttctggcgtttaacaagcgcgtgcaggat
cggctaaaaaacagcgataaactgacctggtgctgcgagctgaagctggacggtctggcc
gtcagcatcctgtatgaaaacggcgtgctgatcagcgcggcaacgcgtggcgatggaacg
accggcgaggacatcacctccaatgtgcgtaccattcgcgctattccgctgaagttgcgt
ggcgataacattccggcgcgtctggaggttcgtggcgaagttttcctgccgcaggccggg
tttgaaaaaattaatgaagaggcgcgccgcaccggtaataaagtatttgccaatccgcgt
aacgctgcggcggggtcgttgcgccagcttgatccgcgtattacagcgaagcgaccgctc
actttcttttgctacggcgtcggcattctggaaggtggcgaactgcccgatacgcatctg
gggcgcttgctgcaattcaaagcctgggggcttccggtaagcgatcgggtgacgttgtgc
gactctcccgaagcggtgctggacttctatcacaaagtggaagaagaccgcccgacgctg
ggttttgacattgacggcgtggtgattaaagtcaactcgatggcgttgcaggaacagctt
ggattcgtcgcccgcgcgccgcgctgggcggtggcctttaagttcccggcgcaggagcaa
atgacgtttgtacgcgatgtagagttccaggtggggcggactggcgcgatcacgcccgtc
gcccgtctcgaaccggtgcatgttgcgggtgtgctggtcagcaacgccaccttgcacaac
gcggatgaaattgagcgtcttggcctgcgcattggcgacaaagtggtgattcgccgcgcg
ggggatgtgatcccgcaggtggtgaacgtggtgctttccgaacgcccggaagagacgcgc
ccggtcgagttcccgacgcattgcccggtgtgcggttctgatgtcgagcgcgtggaaggc
gaagcggtcgctcgctgtaccggcggcctgatctgcggcgcgcagcgcaaagagtcgctc
aagcactttgtttcccgccgggcaatggacgttgacggcatgggcgataaaattatcgac
cagcttgtcgagaaagaatatgtccacaccccggcagatctgttccgtctgacggcaggc
aaactgacgggtctggatcgtatggggccgaaatcggcgcagaatgtggtgaatgcgctg
gagaaagcgaaagagaccaccttcgcgcgattcctctatgcgctcggtatccgcgaagtg
ggcgaagccacggcggcagggctggcggcgtacttcggtacgttagaggcgctggaagcg
gcctctatcgacgaactgcaaaaagtgccggatgtcggcattgtggtcgctacgcacgtc
tttaacttctttgctgaagagagtaaccgggacgtgatcgggcagttactggcggaaggc
attcactggcctgcgccgatcgtggttaacgccgacgaaatcgacagcccgtttgccggt
aaaacgatcgtcctgacgggcagcctcagcctgatgtcgcgagatgatgcgaaagcgcgc
ctcgtggcgctgggggcgaaagtggcgggcagcgtatcgaaaaaaaccgatctggtgatt
gcgggcgaagcggcgggatctaagctggcgaaagcgcaggaactggggattgacgtgatc
gacgaagcagagatgctccgcttactgggtgtctga
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integrated database retrieval system
