Citrobacter sp. CFNIH10: C2U53_28410
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Entry
C2U53_28410 CDS
T05324
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cir
Citrobacter sp. CFNIH10
Pathway
cir03030
DNA replication
cir03410
Base excision repair
cir03420
Nucleotide excision repair
cir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C2U53_28410 (ligA)
03410 Base excision repair
C2U53_28410 (ligA)
03420 Nucleotide excision repair
C2U53_28410 (ligA)
03430 Mismatch repair
C2U53_28410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cir03032
]
C2U53_28410 (ligA)
03400 DNA repair and recombination proteins [BR:
cir03400
]
C2U53_28410 (ligA)
Enzymes [BR:
cir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C2U53_28410 (ligA)
DNA replication proteins [BR:
cir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C2U53_28410 (ligA)
DNA repair and recombination proteins [BR:
cir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C2U53_28410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C2U53_28410 (ligA)
MMR (mismatch excision repair)
DNA ligase
C2U53_28410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C2U53_28410 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
Prok-E2_C
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AUZ67430
UniProt:
A0A3Q8DKP5
LinkDB
All DBs
Position
complement(4963523..4965538)
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAAPLASFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDKLTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPTRLEVRGEVFLPQAG
FEKINEDARRTGGKLFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLQFKAWGLPVSDRVTLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSMALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTRPVAFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVEALEKSKSTTFARFLYALGIREVGEATAAGLAAYFGTLEALEA
ASIDELQKVPDVGIVVATHVFNFFAEESNREVIGQLLAEGIHWPAPVVINAEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEAEMLRLLGV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgaccgaactgcgaaccacgcttcgccatcatgagtat
ctttaccatgtgatggatgcgccggaaatccccgatgcagaatatgaccgcctgatgcgc
gagctgcgtgaactggaagcgcaacacccggagctgattactccggactctccgacccag
cgcgtgggtgctgcgccgctggcgtctttcagccagattcgtcatgaagtgccgatgttg
tcgctggacaacgtctttgatgaggagagtttcctggcgtttaacaagcgcgtgcaggac
cgtcttaagagcagtgacaagctgacctggtgctgtgagctgaaactggacggtctggcg
gtcagcattctctatgaaaacggggtgctggtgagtgccgcaactcgcggtgatggtacg
accggtgaggacattacctcaaacgtgcggactattcgcgccattccgctgaaactccac
ggcgataacattccgacgcgtctggaagtgcgaggcgaagttttcctgccgcaggcgggt
tttgaaaagatcaatgaagatgctcgccgcacgggcggaaagctgtttgctaacccgcga
aatgcggcagcgggctcgctgcgccagctcgatccgcgtatcaccgcgaagcgaccactc
actttcttctgctatggcgttggcgtgctggaaggcggcgaactgcctgatactcatctg
gggcgtctgctgcaattcaaagcatgggggttgccggtcagcgatcgcgtgacgctgtgt
gactcgccggaagcggtgctggcgttttaccacaaggtggaagaggatcgtccgacgctg
ggtttcgacatcgatggggtggtgattaaggtcaactcgatggcgctacaggagcaactg
ggtttcgtcgcacgtgcgccgcgctgggcggtggcctttaaattcccggcgcaggaacag
atgacctttgttcgtgacgtggagttccaggtcggacgcaccggagcaattactcccgtt
gcgcgtcttgaaccggtacaggtcgcgggtgtgctggtgagtaacgccacgctgcataat
gccgatgaaatcgaacgtcttggcctgcgcattggcgataaggtggtaattcgccgtgct
ggcgatgttattccgcaggtggtcaacgtggtgctttccgaacgtccggacgacacgcgt
ccagtagcatttccgacgcattgcccggtatgcggttcagacgttgagcgcgtggaaggt
gaagcggttgctcgctgtaccggcggtttgatttgcggcgcgcagcgtaaagaatcgctc
aagcatttcgtatctcgtcgggcgatggacgtggatgggatgggcgacaaaattatcgac
caactggtcgagaaagagtatgtccacacgccggcggacctgtttcggctgacagccggg
aaactgaccggtctcgaccgaatggggccgaagtcggcgcaaaacgtggtggaggcgctg
gaaaaatcgaaatcgaccacctttgcgcgcttcctgtatgcactcggtattcgggaagtt
ggagaggccacggccgctggtctggccgcttacttcgggactctggaagcgctggaagcg
gcgtctattgacgagctgcaaaaagtccccgatgtgggcattgtggtcgccacccatgtg
ttcaatttctttgctgaagagagcaatcgcgaagtcatcgggcaactgctggcggaaggc
attcactggcctgcaccggtggtgatcaatgcggaagagattgacagtccatttgccggg
aaaacggtagtgctgacgggaagcctgagccagatgtcgcgcgatgatgctaaagcgcgg
ctggtggagctcggtgcgaaagtggcgggcagcgtctcgaagaagaccgatctggttatt
gctggcgaagcggccggttccaagctggcaaaagcgcaggagctggggattgcagtgatt
gacgaagcggaaatgctccgcctgctgggtgtctga
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integrated database retrieval system
