Cellulomonas iranensis: LFM56_12620
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Entry
LFM56_12620 CDS
T07886
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cira
Cellulomonas iranensis
Pathway
cira03030
DNA replication
cira03410
Base excision repair
cira03420
Nucleotide excision repair
cira03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cira00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LFM56_12620 (ligA)
03410 Base excision repair
LFM56_12620 (ligA)
03420 Nucleotide excision repair
LFM56_12620 (ligA)
03430 Mismatch repair
LFM56_12620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cira03032
]
LFM56_12620 (ligA)
03400 DNA repair and recombination proteins [BR:
cira03400
]
LFM56_12620 (ligA)
Enzymes [BR:
cira01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LFM56_12620 (ligA)
DNA replication proteins [BR:
cira03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LFM56_12620 (ligA)
DNA repair and recombination proteins [BR:
cira03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LFM56_12620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LFM56_12620 (ligA)
MMR (mismatch excision repair)
DNA ligase
LFM56_12620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LFM56_12620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
UCN13742
LinkDB
All DBs
Position
complement(2799349..2801913)
Genome browser
AA seq
854 aa
AA seq
DB search
MSDPTPQTAERDVPAEARHRWTELAEQIRADQFAYYVRDAPSSSDAAYDERLRALEALEA
EHPGLRTPDSPTQRVGGTFSTEFTAVDHVQRMLSLDNAFSRDDLLAWSQRVHRDLESDAP
LAYLTELKIDGLAIALLYERGRLVRAATRGDGRTGEDVTLNVRTITTIPEVLGGDPATHP
ELIEIRGEVFLPVEAFRTLNEAQVAAGRPPFANPRNAAAGSLRQKDPRVTASRPLRMYAH
GIGALTWGEGRGQGIERQSQVYELLAGWGVPTSSHTRVLDGLDDVWDRIAYYGEHRHDVE
HEIDGVVVKVDDIALQRRLGATSRAPRWAIAYKYPPEEVFTRLLAIEVGIGRTGRATPFG
VMEPVTVAGSTVRQATLHNQDVVRLKDVRPGETVVLRKAGDVIPEIVGRAPQADEGERPP
AWHMPADCPECGTPLRPMREGDVDLRCPNAQGCPAQVRGRLEHIGSRGAFDIEVLGEVTA
AALTQPEVPSTPPVPTEAYLFDLVRYGDDPTPDDVAHVRDASLATLAQVEVVVRDAETGL
PKEDEDGTVRRRTPFRRTLKHTKAQRAAAEAEGRVLREWEPSEAARTLLDQLELAKSKEL
WRVLVALSIRNVGPTAARALAQEFGSMRALREVVDATWWPDEPDAPAAAGTGDGAGAGQQ
DALDLAGADDGPAVDVAEEPAPDPHAAHRAAAVARLSGVEGVGPTIAQSLLDWFGEPWHR
EVVDRWAAAGVVMEDVADASTPRTIEGVTVVVTGSLERFSRDGAKEAILARGGKASGSVS
KKTDFVVVGENAGSKETKARELGLRILDEAGFETLLAGGPDAVGPPPAADGGSDAVAAGA
TGQDDEAAAPDDAS
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacccgaccccgcagaccgccgagcgcgacgtgcccgccgaggcccggcaccgc
tggaccgagctggccgagcagatccgggccgaccagttcgcgtactacgtgcgcgacgcg
ccgtcgtcgtcggacgccgcgtacgacgagcggctgcgggcgctcgaggcgctcgaggcg
gagcacccggggctgcgcacgccggactcgccgacgcagcgcgtcggcggcacgttctcg
accgagttcacggcggtcgaccacgtgcagcgcatgctgtcgctcgacaacgcgttctcg
cgtgacgacctgctcgcgtggtcgcagcgcgtgcaccgtgacctggagtcggacgcgccg
ctcgcgtacctcacggagctgaagatcgacgggctcgcgatcgcgctgctgtacgagcgc
gggcggctcgtgcgggcggccacgcgcggcgacggccgcacgggcgaggacgtcacgctc
aacgtccgcaccatcacgacgatccccgaggtcctcggcggcgaccccgcgacccacccc
gagctcatcgagatccgcggcgaggtgttcctgccggtcgaggcgttccgcacgctcaac
gaggcgcaggtcgcggccggccgcccgccgttcgcgaacccgcgcaacgccgccgccggc
tcgctgcggcagaaggacccgcgcgtcacggcgtcccgcccgctgcgcatgtacgcgcac
ggcatcggcgcgctgacgtggggcgagggtcgtgggcagggcatcgagcggcagtcgcag
gtgtacgagctgctggccggctggggcgtgccgacgtcgtcgcacacgcgcgtgctcgac
gggctcgacgacgtgtgggaccgcatcgcgtactacggcgagcaccgccacgacgtcgag
cacgagatcgacggcgtcgtggtcaaggtcgacgacatcgcgctgcagcgcaggctgggt
gcgacgagccgcgcgccgcgctgggcgatcgcgtacaagtacccgcccgaggaggtgttc
acgcgtctgctggcgatcgaggtgggcatcggtcgcacggggcgcgcgacgccgttcggc
gtcatggagcccgtgacggtcgcgggcagcaccgtgcgccaggcgacgctgcacaaccag
gacgtcgtccggctcaaggacgtgcggccgggcgagacggtcgtgctgcgcaaggccggc
gacgtcatccccgagatcgtggggcgtgcgccgcaggccgacgagggcgagcggccgccc
gcgtggcacatgcccgccgactgccccgagtgcggcacccccctgcggcccatgcgcgag
ggcgacgtcgacctgcgctgcccgaacgcgcagggctgccccgcgcaggtgcgcggccgg
ctcgagcacatcggctcgcgcggcgcgttcgacatcgaggtgctcggcgaggtcactgcc
gccgcgctcacgcagcccgaggtgccgagcacgccgcccgtgccgaccgaggcctacctg
ttcgacctcgtgcgctacggcgacgacccgacgcccgacgacgtggcgcacgtgcgtgac
gcgagcctcgcgacgctcgcgcaggtcgaggtcgtcgtgcgcgacgccgagacggggctg
cccaaggaggacgaggacggcaccgtccggcgccgcacgcccttccgccgcacgctcaag
cacaccaaggcgcagcgcgccgccgccgaggccgaggggcgcgtgctgcgcgagtgggag
ccgtccgaggccgcccgcacgctgctcgaccagctcgagctggccaagtccaaggagctg
tggcgcgtgctcgtggcgctgagcatccgcaacgtcgggccgacggccgcgcgcgcgctc
gcgcaggagttcgggtcgatgcgcgcgctgcgcgaggtcgtcgacgcgacgtggtggccc
gacgagcccgacgcacccgccgcggcgggcacgggcgacggggccggagcggggcagcag
gacgccctcgacctggccggggccgacgacggacccgccgtcgacgtcgccgaggaaccc
gcgccggacccgcacgccgcgcaccgcgcggccgcggtcgcgcggctctcgggcgtggag
ggcgtcgggccgacgatcgcgcagtcgctgctcgactggttcggcgagccgtggcaccgc
gaggtcgtcgaccggtgggccgcggccggcgtcgtcatggaggacgtcgccgacgcctcg
acaccccggacgatcgagggcgtcacggtcgtcgtcacgggcagcctcgagcggttcagc
cgcgacggcgccaaggaggcgatcctcgcgcgcggcggcaaggcgtcgggctcggtctcg
aagaagaccgatttcgtggtcgtcggcgaaaacgcgggctcgaaggagacgaaggcgcgc
gagctcggcctgcggatcctcgacgaggcggggttcgagacgctgctggccggcggcccc
gacgcggtcgggccgccgcccgcggccgacggcggcagcgacgcggtggcggccggggcg
accgggcaggacgacgaggcggccgcgcccgacgacgcgtcgtga
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