Citrus sinensis (Valencia orange): 102608210
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Entry
102608210 CDS
T02983
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit04075
Plant hormone signal transduction
cit04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
102608210
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
102608210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cit03000
]
102608210
Transcription factors [BR:
cit03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
102608210
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
102608210
NCBI-ProteinID:
XP_006492434
LinkDB
All DBs
Position
3:join(46694426..46694427,46694517..46695381,46695469..46695564,46695696..46695761,46695872..46695937,46696223..46696654)
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AA seq
508 aa
AA seq
DB search
MSNQEFLELVWEDGQLRMRGSSKRTQKSTSSCIDHASRSSNARLENGGNTDTFPPKNENQ
HESLLEISYKSHFNAFSEHATGYNIDYDDKLRKDSQVVPVHETTPTPTGNRQSRDSTPLK
RPRVKYSPNLLSLDVLKREPEKKREQPVNFSLFLRSPALRTSSRRGFSRAEPEKVQNKPR
LLSPAANGSASVKGFQNQLNSADTNAELLQPVPVTVPDVQSEADYSRTSSLPAENTVKRK
LDAGKCIEPPVPSSSLCSLGASNNNPACTTFNLKRRYEDTEVSACPCDQYEKKLERKAVT
VRGSKSNRKKRTPEVHKRYERKRRDKINKKMRALQELIPNCNKVDKASVLEEAIDYLKTL
QFQVMMMSMGTGVCMPSMMLPTGIIGMQQMHAVAPQMSHFPPMGIGMDGRMQMGAGCNPA
QFLMPPIPGATAVPGIQMPGFPGQPLPMSMLRTPLGLMHKTNPVAGVSRAAASMEVKDSA
PLTNPGDSNQNVEINKRNVEHHKIRPSA
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatcaagaatttttggagcttgtgtgggaagatggtcaacttcgcatgcgaggt
tcttcaaagagaactcaaaagagcacttcctcgtgcattgatcatgcttctcgctcgtcc
aatgctcgtttggaaaatgggggaaatacagacacctttcctccaaagaatgagaaccaa
catgaatcgctgcttgaaatatcgtataaaagccattttaatgcattttcggaacatgct
acaggttataatattgattatgatgataagctacgcaaggactctcaagttgttccggtg
catgaaactaccccaactccaacgggtaaccgtcagtctcgtgattcaactccacttaaa
aggccacgagttaaatacagcccgaatctactttcattggatgtattgaaaagagaacct
gaaaagaaaagagagcagccagttaacttttctcttttcttgagatctccagcgctgcga
acaagcagtaggagaggtttctcaagagctgagcctgagaaggtgcaaaataagcctcga
ctgctatcgccagcagctaatggttcagcgagtgttaagggatttcagaaccagctgaat
tctgcagacacaaacgcggagctgttacaaccagtcccagtcacagtccccgatgtacaa
tcggaagctgattacagccgaacctcgagcttaccggctgagaatactgtcaaacgaaag
ctggatgctggaaaatgtatagaaccaccagttccgtcttcttccttatgctcacttgga
gcttcaaataataatcctgcgtgtactacttttaatttgaagaggagatatgaagatacc
gaggtatccgcttgtccttgtgaccaatatgagaagaaactggagagaaaagcagtgact
gttcggggcagcaaaagtaaccggaaaaaacgaactcctgaagttcataagcgatatgaa
cggaagcgaagagataagatcaacaagaaaatgcgtgcattacaggagctcataccaaat
tgcaataaggtggacaaagcttcggtgcttgaggaggccattgattacttaaagactctt
cagtttcaagtaatgatgatgtcaatgggaacaggggtttgtatgccttcgatgatgcta
cctacaggaataataggaatgcaacaaatgcatgcagttgcaccgcagatgagtcatttc
cctcccatgggaattggaatggacgggagaatgcaaatgggtgctggctgcaacccagca
cagttcctaatgccacccattccaggagccactgctgtgcctggaatccagatgcctggc
tttcctggacagccgctgcccatgtccatgttacgcacaccattaggactaatgcacaaa
acaaatccagttgccggcgtctctcgagctgctgcttcaatggaagtcaaggactctgca
ccgctcacaaatcccggggattccaatcagaacgtagaaattaacaaaagaaacgttgag
caccacaagattcgaccttctgcttag
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