KEGG   Citrus sinensis (Valencia orange): 102610368
Entry
102610368         CDS       T02983                                 
Name
(RefSeq) 5'-3' exoribonuclease 4
  KO
K20553  5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit04016  MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:cit00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04016 MAPK signaling pathway - plant
    102610368
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102610368
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     102610368
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC
Other DBs
NCBI-GeneID: 102610368
NCBI-ProteinID: XP_006471738
LinkDB
Position
5:complement(join(24624578..24625226,24625589..24625668,24626157..24626232,24626324..24626428,24626516..24626667,24626990..24627064,24627165..24627205,24627291..24627367,24627487..24627615,24627988..24628058,24628242..24628337,24628805..24628894,24629974..24630060,24630246..24630323,24630478..24630642,24630751..24630897,24630988..24631050,24631206..24631325,24631499..24631690,24631781..24631857,24631936..24632038,24632909..24633115))
AA seq 959 aa
MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII
HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF
RAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ
ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHKK
KYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGA
INLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNEA
MKLNARRESSEELLQAPVAVTDTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYV
EGLCWVCRYYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPA
ASSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKK
LEVFLTEEELFRNSVMLDLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGRM
NGYIWLCERNGLRSIIPSPVKGLPDIERNQAINVTYLNPQKHRHIPEPPKGATIPAKTLK
PIDIKPFPTLWHEDNSRRQQGRERPQVPGAIAGPVLGEAAHRLIKNTLNYKPNGSPGFFE
QPSYHNFQGNYANAVTRLRPAAPSGHERGYGDESRYNYGNYNYPQGMRGNSRFPVPSNGM
QGNKHHARMQERFQHQDLGTGMSALAIEESTRSRPPIVMLSRVQNSGYSGNPSQQFLPNM
GPLPPPPNNWINRAAAGEPAMYNGHESASGGAYEKQQVKKVYQIKTRLPYETSDPLNQK
NT seq 2880 nt   +upstreamnt  +downstreamnt
atgggagtgccggcgttttaccggtggttagcggatcgctatccgctgtcgattgttgac
gtcgtggaggaggatcctcaagttgacggcgaaggagtcgccagacctgttgacgtttcg
aaacctaaccctaacggcatggaattcgataatttgtatttggatatgaacggaattatt
catccttgttttcaccccgatggcaagcctgcccctacctcgtatgatgatgtatttaaa
tctatctttgattacattgatcatattttcttattggttcgtccgagaaagcttctctat
ttggcaattgatggggtggcgcctagagctaaaatgaatcagcaacgtactcgacgtttc
agagctgcaaaagatgctgctgaggctgaagctgaagaggaaaggctgaggaaagaattt
gaagaagcagggaaactcttatctgctaaagaaaaacctgaaacatgtgattcaaatgtt
attactccaggcactcaatttatggcagtgctttcggccgcacttcagtattttatacaa
gctaggttaaaccaaatcccaggctggcagtttacaaaggttatactttctgatgcgaat
gtccctggcgaaggagagcacaaaatcatgtcatacatacgattacagcgtaaccttcct
ggttttgatccaaacacccggcattgtctgtatggtctggatgcagatttaataatgctg
tctttggccacacatgagattcacttttcgatattgagagaggtaatcactttacctggg
caacaggaaaaatgttttgtttgtggccaagttggccatctagcagctgagtgtcatggt
aagccaggtgacaatcctgcagattggaatggagtggatgatactccaattcacaagaag
aaataccagtttctaaacatctgggtgctgcgagaatatttgcaatatgagttggacata
cccaatccaccatttccaataaactttgaaagaattgtggatgattttgtatttctatgt
ttctttgttgggaatgacttcctcccacatatgccaacactggaaatcagggagggtgct
ataaatttgttgatgcatgtttatagaagggagtttactgccatgggtggttatcttact
gatgcgggtgaggttttattggatagagtagagaaatttatccagtccgttgccgtatat
gaagatcaaatctttcagaagaggacacgtatacagcaggcttacgagtataatgaagcg
atgaaacttaatgcaagaagagaatcctctgaagagctattacaagcaccagttgcagtc
acagacacggttaaattgggggagcccggatacaaagaaaggtattatgccgataagttt
gaaatatcaaacccagaagagattgataaagttaaaaaggatgtagttttgaagtatgtg
gaaggtttatgctgggtctgccgctattactatcaagatgtttgctcttggcaatggttt
tatccataccattatgctccatttgcttcagatcttaaagatttatccgaccttgaaata
acgtttttcttgggagaaccatttagaccctttgatcagctaatgggaactctaccagct
gcaagttctagtgctttgcctgaaaaatacagaaatttgatgactgatccatcatcacct
atctacaaattctatcctcctgattttcagattgatatgaatggaaaacgctttgcatgg
cagggcgttgtcaagttgccatttattgatgagaagttgttgctgcgtcaaacaaagaag
cttgaggtgtttttaacggaagaagagctgtttcgaaatagtgtgatgcttgatttactt
tatgttcatccacagcatcctttgtatcaacagattactttgtactgccagctctaccat
cagttgcctcctcaagacagattcgcttgggaaattgatgtaaatgccagtgggcgaatg
aatggatacatttggttatgtgagagaaatggtttgagaagcatcatcccttcacctgtc
aaggggctgccagacattgagcgtaaccaagccataaatgttacgtatcttaaccctcaa
aaacatagacacatcccagaacctcccaagggcgcaaccatacctgctaagaccctaaaa
ccaatagacattaaaccatttcctactctttggcatgaagacaatagtcggcgccagcaa
ggcagggagaggccacaagtgcctggagccatagctggccctgtattgggagaagcagca
catcgtcttatcaagaatacacttaattataaacctaatggttctcctggattcttcgag
caaccatcatatcacaatttccaaggcaactatgcaaatgcagtcaccagactgagacca
gctgcaccttctgggcatgaaaggggctatggtgatgaatcaagatataattatggaaat
tacaattatcctcaaggcatgagaggtaactctagatttccagtcccatcaaatggtatg
caaggaaacaaacaccacgctaggatgcaggagagatttcaacaccaggacttggggact
gggatgtctgccttggcaattgaagaaagcaccagaagcaggcctcctattgtgatgtta
tccagggtgcagaattctggatactcagggaaccctagccagcagtttctgccgaacatg
ggtcctcttccaccaccacccaataactggatcaacagagcagcagctggagagcctgca
atgtataatggacacgaaagtgcatctggtggggcttatgagaagcagcaggtgaagaag
gtttatcagattaagacacgactgccttatgaaacatcagatcccttgaaccaaaaatga

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