Citrus sinensis (Valencia orange): 102620284
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Entry
102620284 CDS
T02983
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102620284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102620284
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102620284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
AAA_23
AAA
Arf
AAA_25
ATP-synt_ab
TsaE
nSTAND3
ORC-CDC6-like
Motif
Other DBs
NCBI-GeneID:
102620284
NCBI-ProteinID:
XP_006480832
LinkDB
All DBs
Position
6:join(14363762..14363930,14364021..14364154,14364489..14364608,14364728..14364823,14364961..14365113,14365253..14365330,14365468..14365704)
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AA seq
328 aa
AA seq
DB search
MAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTT
ILKIIGGKHMVEPEMVKALGRSAFHDTALTSSGDLFYLGGEWRREVAFAGFEVPIQMDVS
AEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI
TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK
VKEASKLSLMRTVESWLRKERDEERKRRRERRASGLPEFDKQIHGSRVTRDPAQAAVRVM
NNGWAAGRLHSTVAGEENFVLSTNRVLR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgatggagaattcaaaaccaacggtggagatcaacgcactgaagttcacgtat
ccgggaatcgacggccatcctccgccggggtccactccattaatcaacgatttcactctc
actctcaatgctggagaccggtgcctcctcgttggatccaacggcgctggaaaaacaacg
atattaaagataattggagggaagcacatggtagaaccagaaatggtgaaagcactggga
aggtctgctttccacgacaccgctttgacttcgtctggtgatctcttctatcttggagga
gagtggaggcgagaggttgcatttgctgggtttgaggttccgattcaaatggatgtgtca
gcggagaaaatgatttttggagttgcaggaattgatccacagagaagagctgaactgatc
aaggtgttagacattgatctatcatggaggatgcacaaggtgtctgatggtcagagaaga
cgtgttcaaatttgcatgggcctcctcaagccattcaaggttcttcttctggatgagata
actgttgatcttgatgtgctagcaagagctgacctcctcaggtttctgagaaaagaatgt
gaagagcgcggtgccacaattatctacgcaacccacatatttgatggtctggagaactgg
ccatcacatattgtgtatgtagctcatgggaagttgcaattagcaatgccgatggataaa
gttaaggaggctagcaagttgtcactaatgagaacagtggagagttggctgaggaaggaa
agagatgaggaaaggaagagaaggagagagagaagggcgagtggtcttccagaattcgat
aaacaaattcacggaagccgtgtaactcgggatcctgcccaggccgcggttcgtgtaatg
aacaatggttgggcagcaggaaggctgcactccacagttgccggtgaagaaaactttgtt
cttagcacaaacagagttctgaggtag
DBGET
integrated database retrieval system
