Citrobacter sp. LUTT5: GUC46_00440
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Entry
GUC46_00440 CDS
T10487
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
citr Citrobacter sp. LUTT5
Pathway
citr03030
DNA replication
citr03410
Base excision repair
citr03420
Nucleotide excision repair
citr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
citr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GUC46_00440 (ligB)
03410 Base excision repair
GUC46_00440 (ligB)
03420 Nucleotide excision repair
GUC46_00440 (ligB)
03430 Mismatch repair
GUC46_00440 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
citr03032
]
GUC46_00440 (ligB)
03400 DNA repair and recombination proteins [BR:
citr03400
]
GUC46_00440 (ligB)
Enzymes [BR:
citr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GUC46_00440 (ligB)
DNA replication proteins [BR:
citr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GUC46_00440 (ligB)
DNA repair and recombination proteins [BR:
citr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GUC46_00440 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GUC46_00440 (ligB)
MMR (mismatch excision repair)
DNA ligase
GUC46_00440 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GUC46_00440 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
RNA_ligase
DUF3701
Xre-like-HTH
Motif
Other DBs
NCBI-ProteinID:
QHI80839
LinkDB
All DBs
Position
91897..93576
Genome browser
AA seq
559 aa
AA seq
DB search
MGLWKGIGLVLLMGYLPAWAVCPVWSPARANEEISRLQQQITQWNDSYWKQGESAVDDGV
YDQLNAQLIQWQRCFGDEVPPDLSAPPMGGTVSHPIPHTGVRKLADKQALQQWMHARSDL
WVQPKVDGVAVTLVYRNGNLVRAISRGNGLKGEDWTQKVLQIPSVPHSTKGNLANSTLQG
EIFLQQEGHIQKQRGGMNARSKVAGLMMRQSNQELLGSLAIFIWAWPDGPAVMSERLEQL
TAAGFSFTQHFTKAVKSADDVEQVRAKWWTSGLPFVTDGVVVRTGKEPQARYWLPGQGDW
LAAWKYPPVARVSEVTGIQFSVGKSGKIAVVALLTPVMLDDKRVQRVNIGSVRRWNEWDI
APGDQILVSLAGQGIPRIDEVVWRSTQRSKPVPPEGRFNSLTCFYATAECQEQFVARLVW
LGAKEVLGLEGIGEAGWRELHQVYRFEHIFSWLGLTQEQLQSTFGVSKGEKLWHQFNLSR
DLPFTRWVIAMGIPLTQATLNACRDGSWQQLQERDEQSWRQLPFMGEQRARQVIQWLEDR
EVTALSNWLAAQRIAGFMP
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgggattatggaaaggcatagggctggttttgctaatggggtatctacccgcatgggcg
gtatgccccgtctggtcacctgccagggcaaacgaggaaatttcacgactacagcagcag
ataacacagtggaatgacagttactggaaacagggtgaaagtgccgtagatgacggcgtt
tatgaccagctcaatgcgcaactaattcaatggcagcgctgttttggtgatgaagttcca
ccagatctgtctgcgccaccaatgggtggcacagtatcgcaccccattccccacacgggt
gttcgaaaacttgccgataagcaagcgctacagcaatggatgcacgcgcgcagcgatctc
tgggtgcaaccgaaggtggatggcgtggcagtgacgttagtctatcgcaatggcaatctg
gtacgggcgattagccgtggtaatggcctgaaaggcgaagactggacgcaaaaggttctt
cagatcccttccgtaccacattccaccaaggggaatctcgctaacagtacgttgcagggt
gagatttttttgcagcaagaggggcatattcagaagcagagagggggaatgaacgcccgc
tcgaaggttgctggattgatgatgcgccagagcaatcaggaattattaggctcgctggct
atttttatctgggcctggcccgatggtcctgcggtcatgtctgaaagactggagcagctc
actgctgccgggttcagtttcacgcaacattttaccaaggccgtgaagagtgcggatgac
gtagagcaagtgcgagcaaagtggtggacttcaggattaccttttgtcactgatggcgtg
gtcgtgcgaacaggaaaagagccgcaggcgcgatactggctacccggacagggagactgg
ctggctgcgtggaaatatcctcccgtggccagggtatctgaggtaaccggtattcagttc
tccgttggtaaaagcgggaaaattgcggtggtagcattgctgactcccgtcatgctggat
gataaacgcgtacagcgcgtcaatattggctccgttcgacgctggaatgaatgggatatc
gcgcctggcgatcagattctggtgagcctggccggacaagggatcccccgtatagatgag
gtggtctggcgcagtacccagcgtagtaagccagtgccacctgaggggcgcttcaattca
ttaacctgtttttatgccacagcggagtgccaggaacagtttgttgccagactggtctgg
ctgggggccaaagaggtgctggggctggagggcatcggcgaggcgggatggcgggagctc
caccaggtgtatcgttttgagcatatcttttcctggctcgggctaactcaggaacaacta
cagtccacatttggtgtaagcaaaggggagaagttatggcatcaattcaacctgtcacgc
gatcttccgttcacgcgctgggtgattgccatgggaataccgttaacacaggcaacgctg
aatgcctgccgggatggttcgtggcagcaattgcaagaacgcgatgaacaaagctggcgg
cagcttcctttcatgggggagcagcgggcacggcaggttattcagtggctggaggatcga
gaggtcacagcgctgagcaactggttagctgctcagcggatcgcgggctttatgccttaa
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