Citrobacter tructae: E4Z61_23680
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Entry
E4Z61_23680 CDS
T07250
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
citz
Citrobacter tructae
Pathway
citz03030
DNA replication
citz03410
Base excision repair
citz03420
Nucleotide excision repair
citz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
citz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E4Z61_23680 (ligA)
03410 Base excision repair
E4Z61_23680 (ligA)
03420 Nucleotide excision repair
E4Z61_23680 (ligA)
03430 Mismatch repair
E4Z61_23680 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
citz03032
]
E4Z61_23680 (ligA)
03400 DNA repair and recombination proteins [BR:
citz03400
]
E4Z61_23680 (ligA)
Enzymes [BR:
citz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E4Z61_23680 (ligA)
DNA replication proteins [BR:
citz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E4Z61_23680 (ligA)
DNA repair and recombination proteins [BR:
citz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E4Z61_23680 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E4Z61_23680 (ligA)
MMR (mismatch excision repair)
DNA ligase
E4Z61_23680 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E4Z61_23680 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
DZR_2
Ned1_M
Motif
Other DBs
NCBI-ProteinID:
QBX83186
UniProt:
A0ABX5T9T7
LinkDB
All DBs
Position
4821926..4823941
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQYPELVTPDSPTQ
RVGAAPLASFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDKLTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGNNIPTRLEVRGEVFLPQAG
FEKINEDARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGVLPDTHL
GRLLQFKEWGLPVSDRVALCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSMSLQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIDRLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVFPSHCPVCGSDVERVEG
EVVTRCTGGLICGAQRKESLKHFVSRRALDVDGMGDKIIDQLVDKEYVHTPADLFQLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLASYFGTLEALEA
ASIEELQKVPDVGIVVATHVFNFFAEESNREVIGQLLAQGIRWPAPVVINVEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEAEMIRLLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaaccacgcttcgccatcatgagtat
ctttaccatgtgatggatgcgccggaaattcccgatgcggaatatgaccgcctgatgcgt
gaactgcgcgaactagaagcgcagtatccggagttggttacgcccgactcgccgacgcaa
cgtgtaggtgcggctccgctggcgtccttcagccagatacgccatgaagtacctatgctg
tcgctggataacgtgtttgatgaagagagttttctcgccttcaataaacgcgtgcaggac
cggctgaagagtacggacaaactgacctggtgctgtgaactgaagctggatggtttggcc
gtcagcattctgtatgaaaatggtgtactggttagcgcggcaacgcgcggtgacggcaca
accggtgaggacattacctctaatgtgcgtaccattcgcgcgatcccactaaaactgcgt
ggcaacaatatcccaacgcgtctggaagtgcgtggcgaagtctttctgccgcaggctggt
tttgaaaaaataaatgaagacgcgcgtcgtaccggcaataaagtgtttgctaacccgcgt
aacgcggcggccgggtcattacgccagctcgatccgcgtatcacggcgaagcgaccgctt
actttcttctgctatggcgtcggtgtgttggaaggcggtgtgctgcctgatacccacctg
ggtcgcctgttgcaatttaaagagtggggactgccagtgagcgacagggtggcgctgtgc
gactccccggaggaagtccttgcttactatcataaggttgaagaagaccgaccaacgctg
ggattcgatatcgacggcgtggtgatcaaagtcaactccatgtcgttgcaggagcagttg
ggcttcgtggcccgtgcgccgcgctgggcggtggcgtttaagttccccgctcaggagcaa
atgacctttgtccgcgatgttgagtttcaggtcggacgcaccggggcgattacgcccgtc
gcccgtcttgagccggtacaggtggcaggagtgctggtcagtaacgccacgttgcacaat
gcggatgaaatcgatcgtctgggtttgcgcattggcgataaggtggtgattcgccgcgcg
ggcgatgtgatcccgcaggtggtgaacgttgtgctttccgaacgtccggaggagacgcgt
gaaatagtcttcccgagccattgtccggtgtgtgggtctgacgttgagcgcgttgaaggt
gaagtcgtcacccgctgcacaggcggcctaatttgcggcgcgcagcgtaaagaatccctc
aaacattttgtctcgcgtcgggcgctggacgttgacggcatgggcgataagattatcgat
cagttggtagataaagagtatgtccatacgcctgccgacctgtttcagttaaccgccgga
aagctaaccgggctggatcgcatggggccaaagtcggcgcaaaatgtggttaatgctttg
gaaaaagcgaaagaaaccacctttgcccgtttcctctacgcgctgggtattcgcgaagtt
ggtgaggccactgctgcgggactggcaagctatttcggtacgctggaggcactggaagca
gcctccattgaggagctgcaaaaagtgccggatgttggcattgtggtagccactcacgtg
tttaatttcttcgccgaagagagtaaccgtgaggtgatcgggcagctactggcgcaaggc
attcgctggcccgcaccggtggtcatcaatgtcgaagaaatcgacagtccgtttgccggg
aaaacagtggtactgactgggagtctgagccagatgtcgcgcgatgacgccaaagcacga
ttgaccgaactcggcgcgaaagtggctggcagcgtgtcgaagaaaaccgatctggtaatt
gccggtgaagccgcaggttcgaaactggcaaaagcgcaggagctgggtattgctgtgatc
gatgaagctgaaatgatccgcttactgggtgcctga
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