Cruoricaptor ignavus: IMZ16_02735
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Entry
IMZ16_02735 CDS
T06873
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
civ
Cruoricaptor ignavus
Pathway
civ03030
DNA replication
civ03410
Base excision repair
civ03420
Nucleotide excision repair
civ03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
civ00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IMZ16_02735 (ligA)
03410 Base excision repair
IMZ16_02735 (ligA)
03420 Nucleotide excision repair
IMZ16_02735 (ligA)
03430 Mismatch repair
IMZ16_02735 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
civ03032
]
IMZ16_02735 (ligA)
03400 DNA repair and recombination proteins [BR:
civ03400
]
IMZ16_02735 (ligA)
Enzymes [BR:
civ01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IMZ16_02735 (ligA)
DNA replication proteins [BR:
civ03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IMZ16_02735 (ligA)
DNA repair and recombination proteins [BR:
civ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IMZ16_02735 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IMZ16_02735 (ligA)
MMR (mismatch excision repair)
DNA ligase
IMZ16_02735 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IMZ16_02735 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
DUF6148
zf-ribbon_3
zf-TFIIB
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
QOR74372
UniProt:
A0A7M1T673
LinkDB
All DBs
Position
594876..596876
Genome browser
AA seq
666 aa
AA seq
DB search
MSAEIQQKIESLREELQQHNYSYYVLDEPTISDFEFDAKLKELQTLEQQHPEFYDANSPT
LRVGGEITKNFPTVRHQYRMYSLDNSYDFNDLEDWERRIIRTLDEPVEFVAELKYDGASI
SLLYENGILTEAVTRGDGFQGDEITGNVRTIQDVPLKLSGDFPQRFFMRGEIFLQRKNFD
RINAQRAEDGLDLYMNPRNTASGSLKLQDSSEVRKRRLSAVLYQFVGEDFPAETHWEILQ
KAKSWDVSISENSRLCRTLQDVKDFINFWDAERHKLPFEIDGIVLKVNSLNQQQQLGYTA
KSPRWAMAYKFKAEKAETELLSVSYQVGRTGAITPVANLKPVLLAGTVVKRASLHNEDII
KKLDLHENDFVFVEKGGEIIPKITGVNLDKRDTQSSEIQYITHCPECGTELVKIEEQAIH
FCPNEAHCPPQVVGKMIHFVSRKAMNIESLGQETIQQLNREKLIENPADFYALTKEQLLP
LERMAEKSAQNIINGIEKSKEIPYEKVLFALGIRHIGETVAKKLTKNFPSIDELKSASLD
ELTQVEDIGEKIALSIIAWFEQPENLLMVERLKQYGVQLQKSENQTDTISDALAGKTFLF
TGKLSLFTREQAEEMVEKHGGKNISAVSKNLNYLVAGEKAGSKLKKAQEIGTVEILDEQQ
FLDLLK
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcggaaattcagcagaaaatcgaaagcctaagggaagaactgcagcagcacaac
tacagttattatgtgctggatgagcccacgatttcggattttgaattcgatgccaaactg
aaggagctgcaaacgctggaacagcagcacccagaattttacgatgccaattcgcctacg
cttcgtgttggcggcgaaatcacgaagaacttcccaaccgttcggcatcagtatagaatg
tattctctggataactcgtacgatttcaatgacttagaagattgggaacgccgcataata
cgcactttggacgagcctgtggaatttgtggcagagctgaaatacgacggcgcttccatt
tcgctgctttacgaaaacggaatcctgaccgaagctgtaacaagaggtgacggcttccag
ggcgatgaaatcacgggaaatgtgcgcacaattcaggatgtgccgctgaagctttcgggc
gattttccacaacggttttttatgcgtggcgaaattttcctgcagcgaaaaaacttcgac
cgcatcaatgctcagcgcgctgaagatggccttgatctttatatgaatccgcggaacaca
gcgtccggaagcctgaaacttcaggattcttcggaagtgcggaaacgccggctgtcagcg
gttttgtatcagtttgtgggcgaagattttcctgcggaaacgcattgggaaattctgcag
aaagcaaaatcctgggatgtttcgatttcggaaaattcgcggctttgcagaacgctgcag
gatgtgaaagatttcatcaatttttgggatgcagaacgccataaattaccctttgaaatt
gatggtatcgtattgaaagtcaattccttaaatcaacagcaacagttgggctacaccgca
aaatcaccacgatgggcaatggcatacaaattcaaggcggagaaagcagaaaccgagctg
ctgagcgtttcctaccaagttggacgaaccggcgccataacaccggtggccaacctgaag
ccggttttgctggcaggaaccgtggtaaagcgggcttctttgcacaatgaagacatcatc
aaaaaactcgatttgcacgagaatgattttgtgttcgtggaaaaaggcggcgaaatcatc
ccgaaaattaccggtgtaaatttagacaaaagagatacgcaaagttctgaaattcaatac
attacgcattgtccggaatgtggaacggaactcgtaaaaattgaagaacaggcgatacac
ttctgcccgaacgaagcgcattgtccgccacaagtcgtcgggaaaatgattcactttgtt
tcgcggaaagcgatgaacattgaaagcttgggacaggaaaccatccaacagctgaaccgt
gaaaagctgatagagaatccggcggatttctacgcattaacgaaagaacaacttttgccg
ctggaaagaatggcggaaaaatctgcgcagaatatcattaacggcattgagaaatcgaaa
gagattccttatgaaaaagtgctttttgcgctgggaatcaggcacatcggcgaaaccgtg
gcgaagaaactgacgaagaatttcccatcaatcgatgagctgaaaagtgcttcgcttgat
gaactaacccaggtggaagatatcggcgaaaaaattgcgctgagcatcattgcctggttt
gaacagccagaaaatctattgatggttgagcgactaaaacagtacggcgttcagctgcaa
aaatctgaaaatcaaacagatacgattagcgatgcattagccgggaaaacttttctattc
accggaaagctttcgcttttcacgagagagcaggcggaagaaatggtggaaaagcacggc
ggcaagaatatttccgcggtttccaaaaacctgaattatttagtggcaggcgaaaaagcg
ggcagcaaactaaaaaaggcgcaggaaatagggacggtggaaattctggatgaacagcaa
ttcctggatttgctgaagtaa
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