Citrobacter sp. XT1-2-2: M4I31_00495
Help
Entry
M4I31_00495 CDS
T09034
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cix
Citrobacter sp. XT1-2-2
Pathway
cix03030
DNA replication
cix03410
Base excision repair
cix03420
Nucleotide excision repair
cix03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M4I31_00495 (ligB)
03410 Base excision repair
M4I31_00495 (ligB)
03420 Nucleotide excision repair
M4I31_00495 (ligB)
03430 Mismatch repair
M4I31_00495 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cix03032
]
M4I31_00495 (ligB)
03400 DNA repair and recombination proteins [BR:
cix03400
]
M4I31_00495 (ligB)
Enzymes [BR:
cix01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M4I31_00495 (ligB)
DNA replication proteins [BR:
cix03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M4I31_00495 (ligB)
DNA repair and recombination proteins [BR:
cix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M4I31_00495 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M4I31_00495 (ligB)
MMR (mismatch excision repair)
DNA ligase
M4I31_00495 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M4I31_00495 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Xre-like-HTH
Motif
Other DBs
NCBI-ProteinID:
UQX59483
LinkDB
All DBs
Position
103121..104800
Genome browser
AA seq
559 aa
AA seq
DB search
MRLWKCLGIVLLVWNLPVWAVCPAWSPARASEEISRLQQQITQWNDSYWKQGVSAVDDSV
YDQLNAQLIQWQRCFGDEAPPDLSAPPISGTVSHPVPHTGVRKLADKQALQQWMRVRSDL
WVQPKVDGVAVTLVYRNGNLVRAISRGNGLKGEDWTQKVLRIPSVPHTSKGLLANSTLQG
EIFLQQEGHIQQQSGGMNARSKVAGMMMRQSNPELLRSLAIFIWAWPDGPAVMSERLEQL
TAAGFSFTQRYTQPVKNADDVEHARTRWWTSALPFVTDGVVVRSGKEPQARYWLPGQGDW
LAAWKYPPVAQVSEVTDIQFSVGKSGKIAVVALLAPVMLDDKRVQRVNIGSVRRWNEWDI
APGDRILISLAGQGIPRIDEVVWRSTQRTKPTPPVGHFNSMTCFYATPACYEQFIARLVW
LGAKEVLELEGIGEAGWRNLHQTYHFEHIFSWLGLTQEQLRSTLGVSKGEKMWHQFNLSR
HLPFTRWVIAMGIPLTQATLNACRDASWQQLQDRDEQSWRQLPLMGERRARQIIQWLEAR
EVIALSNWLAAQRITGFMP
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaggctatggaaatgccttggcatagttttactggtctggaatttaccggtttgggcg
gtatgccctgcctggtccccagcccgggcaagcgaggaaatttcacgattacagcagcag
ataacacaatggaatgatagttactggaaacagggtgtcagcgccgttgatgacagcgtt
tatgaccagctcaatgcgcaactcatccaatggcagcgctgttttggcgatgaagctcca
cctgatctgtctgcgcccccaataagtggcaccgtctcgcatccagtacctcacacgggg
gtccgcaagctggcagataagcaagcgttacagcaatggatgcgtgtgcgcagcgatctc
tgggtacaaccaaaggtcgacggcgtggcggtcacgctggtctatcgcaatggcaatctg
gtaagagcgattagccgaggtaatggcctgaaaggtgaagactggacgcaaaaggtgctg
cggataccttccgtaccacacacttccaaaggtctgctggcaaacagtacgttgcagggt
gagatatttttacagcaggaagggcatatccagcaacagagcgggggaatgaatgcccgc
tcaaaggtcgctggaatgatgatgcgccagagcaacccggaattgttacgttcgttggct
attttcatctgggcctggcctgatggtccggcggtcatgtcggaaaggctggaacaactc
actgccgccgggttcagtttcacgcaacgctatacccagcccgtgaaaaatgcggacgat
gtcgagcatgcccgtacccgttggtggacttcggcactcccttttgtgacggatggcgtc
gtggtgcgatcggggaaagaaccgcaggcgcgatactggttacctgggcagggagactgg
ctggcggcatggaaatatccgcccgtggctcaggtatccgaggtcacagatattcagttt
tcagtcggtaaaagtgggaaaattgccgtagtcgcgctgctggcacccgtcatgctggat
gataaacgcgtgcaacgcgtcaatattggctctgtacgccgctggaatgaatgggatatc
gcgcctggagatcggatcctgataagcctggccggacaggggatcccgcgtatcgacgaa
gtggtctggcgtagcactcaacgcactaagccaacgccgcctgtgggacatttcaattca
atgacctgcttttatgccacgccggcgtgttatgagcaatttattgccagactggtttgg
ctgggcgcgaaagaagtgctggaattagaaggtattggtgaagcgggatggcgtaacctt
catcagacgtatcactttgaacatatcttttcctggctcggattaactcaggagcagctc
cggtccacattaggcgtaagcaaaggggagaagatgtggcatcagttcaacctgtcgcgc
catcttccgttcacacgttgggttatagccatgggaataccgttaacacaggcaacgctg
aatgcctgtcgggatgcttcgtggcaacaattgcaggaccgtgatgaacaaagctggcga
caactccctttaatgggggagcgccgggcacgacagattattcagtggctggaggccagg
gaggtcatagcgctgagcaactggctggctgctcagcgtattacgggctttatgccttaa
DBGET
integrated database retrieval system
