Citrobacter sp. XT1-2-2: M4I31_07055
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Entry
M4I31_07055 CDS
T09034
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cix
Citrobacter sp. XT1-2-2
Pathway
cix03030
DNA replication
cix03410
Base excision repair
cix03420
Nucleotide excision repair
cix03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M4I31_07055 (ligA)
03410 Base excision repair
M4I31_07055 (ligA)
03420 Nucleotide excision repair
M4I31_07055 (ligA)
03430 Mismatch repair
M4I31_07055 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cix03032
]
M4I31_07055 (ligA)
03400 DNA repair and recombination proteins [BR:
cix03400
]
M4I31_07055 (ligA)
Enzymes [BR:
cix01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M4I31_07055 (ligA)
DNA replication proteins [BR:
cix03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M4I31_07055 (ligA)
DNA repair and recombination proteins [BR:
cix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M4I31_07055 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M4I31_07055 (ligA)
MMR (mismatch excision repair)
DNA ligase
M4I31_07055 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M4I31_07055 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
RNA_ligase
zf-NADH-PPase
ZnuA
Motif
Other DBs
NCBI-ProteinID:
UQX60697
LinkDB
All DBs
Position
1498644..1500659
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPDLVTPDSPTQ
RVGAAPLSAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDKLTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPTRLEVRGEVFLPQAG
FEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGALPDTHL
GRLLQFKEWGLPVSDRVALCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSMALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIDRLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVFPQHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFTLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALEA
ASVEELQKVPDVGIVVATHVFNFFAEESNREVIGQLLAQGIHWPAPVVINAEEIDSPFAG
KTVVLTGSLSLMSRDDAKARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVI
DEAEMIRLLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaaccacgcttcgccatcatgagtat
ctctaccatgtgatggacgcgccggaaattcccgatgcggaatatgatcgcctgatgcgt
gaactgcgcgagctggaagcgcagcatccggaccttgttacccccgactcgccaacccaa
cgtgttggcgccgcgccgttgtcggcgttcagccagattcgccatgaagtgccgatgctg
tcgctggataacgtgtttgatgaggagagttttctcgccttcaacaagcgcgtgcaggac
cgactgaagagcaccgataagctgacctggtgctgtgaactgaaactggacggcctggcg
gtcagtatcctgtatgaaaacggcgtactggtcagcgccgcaacgcgcggtgatggcacc
acgggggaggatattacctctaacgtgcgcactatccgcgcgatcccgttaaaactgcgt
ggcgataatattcccacgcgtctggaagtgcgcggggaagtgttcctgccacaggccgga
tttgaaaaaattaatgaagaagcccgccgcaccggcaataaagtgtttgctaatccgcgc
aacgccgccgccgggtcattacgccagcttgatccccgtatcacggcgaagcgaccgctt
actttcttctgctatggcgttggtgtgctggaaggcggcgcgctgcctgatactcacctc
ggccgtctgctgcaatttaaagagtggggactgccggtaagcgacagggtagcgctgtgt
gactcgccggaggaagtactcgcttactatcacaaggttgaagaagaccgaccgacgttg
ggcttcgatatcgacggcgtggtgattaaagtcaactccatggcgttgcaggagcaactg
ggctttgtcgctcgcgcgccgcgctgggcggtggcctttaagtttccggcgcaggagcag
atgacctttgttcgcgatgttgagtttcaggtcggacgtaccggggcgattacgcccgtt
gctcgccttgagccggttcaggttgccggggttctggtcagtaacgccactctgcataat
gccgatgaaatcgatcgtctggggttgcgtattggcgataaagtcgttattcgccgggcg
ggcgatgtaatcccgcaggtggtcaacgtggtgctttccgagcgcccggaagagacgcgt
gaaatcgtgtttccacagcactgtccggtgtgtgggtctgatgttgaacgtgtggaaggc
gaagcggtcgctcgctgtaccggcggcctgatttgcggcgcccagcgtaaggaatcgttg
aaacactttgtttcccgccgcgcgctcgatgttgacggtatgggcgacaaaattatcgat
caactggtggagaaagagtatgtccatacgccagcagatctcttcaccctgacggcaggc
aagctcaccggactcgatcggatggggccaaagtcggcgcaaaacgtggtgaatgcgctg
gaaaaagcgaaagaaacgacgtttgcccgtttcctctacgcgctgggcattcgtgaagtc
ggcgaggccactgccgcaggtctggcggcgtatttcggcactctggatgcgctggaagcg
gcctctgttgaagagctgcaaaaagtgccggatgttggcattgtggtcgcgacgcacgtg
tttaatttctttgccgaagagagcaaccgcgaggtgataggccagttgctggcgcagggc
attcactggcccgcgccggtggttatcaacgctgaggaaatcgacagcccgttcgcgggc
aaaacggtggtgctgaccggaagcctgagcctgatgtcgcgtgatgacgccaaagcacga
ttaaccgaactgggcgcaaaagtggccggtagcgtgtcgaagaaaaccgatctggtgatt
gccggcgaagcggcgggttcgaaactggcaaaagcgcaggaactgggtattaccgtgatt
gatgaagctgaaatgatccgcttactgggtgcctga
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