Citrobacter sp. Y3: HAP28_00620
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Entry
HAP28_00620 CDS
T10856
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ciy Citrobacter sp. Y3
Pathway
ciy03030
DNA replication
ciy03410
Base excision repair
ciy03420
Nucleotide excision repair
ciy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ciy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HAP28_00620 (ligB)
03410 Base excision repair
HAP28_00620 (ligB)
03420 Nucleotide excision repair
HAP28_00620 (ligB)
03430 Mismatch repair
HAP28_00620 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ciy03032
]
HAP28_00620 (ligB)
03400 DNA repair and recombination proteins [BR:
ciy03400
]
HAP28_00620 (ligB)
Enzymes [BR:
ciy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HAP28_00620 (ligB)
DNA replication proteins [BR:
ciy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HAP28_00620 (ligB)
DNA repair and recombination proteins [BR:
ciy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HAP28_00620 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HAP28_00620 (ligB)
MMR (mismatch excision repair)
DNA ligase
HAP28_00620 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HAP28_00620 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
RNA_ligase
Nlig-Ia
DUF3701
CFAP43_N
Motif
Other DBs
NCBI-ProteinID:
QIO37640
LinkDB
All DBs
Position
137584..139269
Genome browser
AA seq
561 aa
AA seq
DB search
MKVGTAILMGLWLWQAQSWAVCPVWSSARAHEEISRLQQQIAQWDDAYWKEGVSVVEDGV
YDQLHARLLQWQHCFADDSPPSQALPSPGGTVPHPVAHTGVQKLPDKRAVQQWMRGHNDL
WVQPKVDGVAVTLKYQHGKLTQAISRGDGLKGEDWTQKVQLMPAVPQTVAGALTNSVLQG
EIFLRREGHIQQKMGGMNARSKVAGLLMRKTSVSDLSSLGIFIWAWPDGPQTMSERVNQL
SAAGFTLAKAFTLPVDNVEAVERARTHWWTSALPFVTDGVVVRMDKEPASHQWLPGQGSW
LVAWKYPPVAQVAEVTAIQFMVGKSGKIAVVATLAPVMLDDKRVQRVNIGSVNRWKEWDI
APGDQILVSLAGQGIPRIDDVVWRSSDRVKPIPPDNRFNSLTCFFASASCQEQFISRLVW
LGSGAVLKLDGVGEAGWRALHQQHHFEHIFSWLALTQEQIQHTPGFAKAKGEQVWHQFNL
VRKQPFIRWIQALGIPLPLVALNASGDRSWRQLSGRTELYWQQLPAVGPRRARQVMTWLD
NAEVKQLSHWLAAQQIESFIP
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttgggacagcgatattgatggggttgtggttatggcaggcgcagtcctgggcg
gtatgtccggtatggtcgtctgcgagggctcacgaagagatctctcgtttgcaacagcaa
attgcgcagtgggatgacgcctactggaaagagggagtgagtgtggtcgaagacggcgtc
tacgatcaactgcatgcacgactgcttcagtggcagcactgttttgctgacgactctccg
cccagccaggcgttgccttcaccgggtggtacggtccctcatcccgtcgcccataccggg
gtacaaaagctgcctgacaagcgagctgtgcagcaatggatgcgcgggcacaacgatttg
tgggtacagccgaaggttgatggtgtggcggttacgctgaaatatcaacatggcaaactg
acgcaggcgatcagccgtggcgatggcctgaagggcgaagactggacgcaaaaagtacag
ctgatgccagccgtgccgcaaaccgtggcgggggcgctgacaaacagcgtgttacagggt
gagatctttctgcgacgggaagggcatatccagcaaaaaatgggcgggatgaatgcccgt
tcgaaggtggcgggtctgctgatgcgcaagaccagcgtaagcgacttatcatcactgggg
atttttatctgggcctggcctgatggcccgcagacaatgtccgaaagagtcaaccagttg
agtgcagcgggttttacactagcgaaggcattcacgctgccagttgacaacgttgaggcc
gtggagcgggcgcgtacgcactggtggacgtccgctttacccttcgttaccgatggggtc
gttgtgcgaatggacaaggaacctgcgtcccaccagtggttaccagggcaagggagttgg
ctggttgcctggaaatacccacccgttgcgcaggtggcggaggtcaccgcgattcaattt
atggtcggcaaaagcggaaaaatcgccgttgtagcaacacttgcccccgtcatgctggat
gataaacgggtacaacgggtgaatatcggttctgtaaatcgctggaaagagtgggatatt
gcccctggcgatcaaatcctggtgagccttgctggacaggggatcccacgtattgacgat
gtcgtctggcggagttcagaccgggttaaaccgatacctcctgataatcgcttcaattca
ttgacttgcttttttgcttccgcatcgtgtcaggaacagtttatctcccgcctggtctgg
ttgggctctggcgctgttttaaagctggacggtgtgggtgaggcgggctggcgggcgctt
catcagcagcatcactttgaacatatcttttcatggctggctttaactcaggagcagatt
cagcacacgccgggatttgcgaaagcaaaaggtgagcaggtatggcatcagtttaatttg
gttagaaaacagccttttattcgctggatacaagcgttaggcatcccgttaccactggtg
gcgctcaatgccagtggcgatcgttcatggcggcagttgtcagggcgaactgaattgtac
tggcaacaacttccggcagtcggcccgcgtcgcgcacgtcaggtgatgacatggctggac
aacgcggaggtcaaacagctgagccactggttggcagctcagcagattgagagcttcatt
ccttag
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