Citrobacter sp. Y3: HAP28_18270
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Entry
HAP28_18270 CDS
T10856
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ciy Citrobacter sp. Y3
Pathway
ciy03030
DNA replication
ciy03410
Base excision repair
ciy03420
Nucleotide excision repair
ciy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ciy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HAP28_18270 (ligA)
03410 Base excision repair
HAP28_18270 (ligA)
03420 Nucleotide excision repair
HAP28_18270 (ligA)
03430 Mismatch repair
HAP28_18270 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ciy03032
]
HAP28_18270 (ligA)
03400 DNA repair and recombination proteins [BR:
ciy03400
]
HAP28_18270 (ligA)
Enzymes [BR:
ciy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HAP28_18270 (ligA)
DNA replication proteins [BR:
ciy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HAP28_18270 (ligA)
DNA repair and recombination proteins [BR:
ciy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HAP28_18270 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HAP28_18270 (ligA)
MMR (mismatch excision repair)
DNA ligase
HAP28_18270 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HAP28_18270 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
Prok-E2_C
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QIO40819
LinkDB
All DBs
Position
complement(3751701..3753716)
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAAPLASFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDKLTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPTRLEVRGEVFLPQAG
FEKINEDARRTGGKLFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLQFKAWGLPVSDRVTLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSMALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTRPVAFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVEALEKSKSTTFARFLYALGIREVGEATAAGLAAYFGTLEALEA
ASIDELQKVPDVGIVVATHVFNFFAEESNREVIGQLLAEGIHWPAPVVINAEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEAEMLRLLGV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgaccgaactgcgaaccacgcttcgccatcatgagtat
ctttaccatgtgatggatgcgccggaaatccccgatgcagaatatgaccgcctgatgcgt
gagctgcgtgaactggaagcgcaacacccggagctgattactccggactctccgacccag
cgcgtgggcgctgcgccgcttgcgtctttcagccagattcgtcatgaagtgccgatgttg
tcgctggacaacgtctttgatgaggagagtttcctggcgtttaacaagcgcgtgcaggac
cgtcttaagagtagcgacaagctcacctggtgctgtgagctgaaactggacggtctggcg
gtcagcattctctatgaaaacggggtgctggtgagtgcagcgacgcgtggtgatggtacg
accggtgaggacattacctcaaacgtgcggactattcgcgccattccgctgaaactccac
ggcgataacattccgacgcgtctggaagtgcgaggcgaagttttcctgccgcaggcgggt
tttgaaaagatcaatgaagatgctcgccgcacgggcggaaagctgtttgctaacccgcga
aatgcggcagcgggctcgctgcgccagctcgatccgcgtatcaccgcgaagcgaccactc
actttcttctgctatggcgttggcgtgctggaaggcggcgaactgcctgatactcatctg
gggcgtctgctgcaattcaaagcatgggggttgccggtcagcgatcgcgtgacgctgtgt
gactcgccggaagcggtgctggcgttttaccacaaggtggaagaggaccgtccgacgctg
ggtttcgacatcgatggggtggtgattaaggtcaactcgatggcgctacaggagcaactg
ggtttcgtcgcacgtgcgccgcgctgggcggtggcctttaaattcccggcgcaggaacag
atgacctttgttcgtgacgtggagttccaggtcggacgcaccggagcaattactcccgtt
gcgcgtcttgaaccggtacaggtcgcgggtgtgctggtgagtaacgccacgctgcataat
gccgatgaaatcgaacgtcttggcctgcgcattggcgataaggtggtaattcgccgtgct
ggcgatgttattccgcaggtggtcaacgtggtgctttccgaacgtccggacgacacgcgt
ccggtagcatttccgacgcattgcccggtatgcggttcagacgttgagcgcgtggaaggt
gaagcggttgctcgctgtaccggcggtttgatttgcggcgcgcagcgtaaagaatcgctc
aagcatttcgtatctcgtcgggcgatggacgtggatgggatgggcgacaaaattatcgac
caactggtcgagaaagagtatgtccacacgccggcggacctgtttcggctgacagccggg
aaactgaccggtctcgaccgaatggggccgaagtcggcgcaaaacgtggtggaggcgctg
gaaaaatcgaaatcgaccacctttgcgcgcttcctgtatgcactcggtatccgggaagtt
ggagaggctacggccgccggtctggccgcttacttcggtactctggaagcgctggaagcg
gcgtctattgacgagctgcaaaaagtccccgatgtgggcattgtggtcgccacccatgtg
ttcaatttctttgctgaagagagcaatcgcgaagtcatcgggcaactgctggcggaaggc
attcactggcctgcaccggtagtgatcaatgcggaagagattgacagtccatttgccggg
aaaacggtagtgctgacgggaagcctgagccagatgtcgcgcgatgatgctaaagcgcgg
ctggtggagctcggtgcgaaagtggcgggcagcgtctcgaagaagaccgatctggttatt
gctggcgaagcggccggttccaaactggcaaaagcgcaggagctggggattgcagtgatt
gacgaagcggaaatgctccgcctgctgggtgtctga
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integrated database retrieval system
