Carettochelys insculpta (pitted-shelled turtle): 142014421
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Entry
142014421 CDS
T11194
Symbol
THBS1
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz04115
p53 signaling pathway
ciz04145
Phagocytosis
ciz04148
Efferocytosis
ciz04350
TGF-beta signaling pathway
ciz04510
Focal adhesion
ciz04512
ECM-receptor interaction
ciz04518
Integrin signaling
ciz04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
142014421 (THBS1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
142014421 (THBS1)
04518 Integrin signaling
142014421 (THBS1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
142014421 (THBS1)
04148 Efferocytosis
142014421 (THBS1)
09143 Cell growth and death
04115 p53 signaling pathway
142014421 (THBS1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
142014421 (THBS1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
142014421 (THBS1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ciz04131
]
142014421 (THBS1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ciz00536
]
142014421 (THBS1)
Membrane trafficking [BR:
ciz04131
]
Endocytosis
Phagocytosis
Opsonins
142014421 (THBS1)
Glycosaminoglycan binding proteins [BR:
ciz00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
142014421 (THBS1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
VWC2L_2nd
EGF_3
cEGF
TSP1_CCN
TSP1_ADAMTS
Laminin_G_3
EGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
142014421
NCBI-ProteinID:
XP_074853061
LinkDB
All DBs
Position
6:59228500..59250222
Genome browser
AA seq
1176 aa
AA seq
DB search
MELSGGLFLLLMLGVYGTNQIPESGGDDNSVFDLFELIGFTRKGGGRRATGVHLVKGPEP
SSPAYRIEDASRIPAVPDDKFQDLLDAIYAEKGFILLATLRQAKKSRGTLLAVERKHSSG
HIFNLVSNGKAGTLDLSLSGDGKQQVVSVEDALLATGHWKNITLFVQEDRAQLYVGCEKM
ENAELDIPIQNIFTRDLASSAKLRIAKGGVNDNFQGVLQNVRFVFGTTLEAILRNKGCSS
STNAIITLDNAINGSSPAIRTNYIGHKTKDIQAVCGFSCEELTNMFVEMQGLRSMVTTLQ
DRVRKVTEENELIARVVQITPGVCIHNGILHKNKEEWTIDSCTECTCQNSATICRKVSCP
LMPCSNATVPDGECCPRCWPSDYAEDGWSPWSEWTSCSVTCGNGVQQRGRSCDSLNNRCE
GSSVQTRTCHIQECDKRFKQDGGWSHWSPWSSCSVTCGTGMITRIRLCNSPVPQLNGKPC
EGEARETKSCQKDPCPINGNWGPWSPWDICTVTCGGGIQKHGRLCNDPEPQYGGKDCIGD
ATGVRVCNKQDCPIDGCLSNPCFAGTTCTSSPDGSWKCGACPTGYQGNGVQCKDIDECQE
VPDTCFVLGGLHRCENTEPGYNCLPCPPRFTGTQPFGRGIEDATANKQVCKPRNPCTDGT
HDCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNEDLVCVANATYHCK
KDNCPNLPNSGQEDYDKDGIGDACDSDDDNDNIPDDRDNCPFIYNPQQYDYDRDDVGDRC
DNCPYDHNPDQTDTDNNGEGDACAVDIDGDGILNEQDNCQYIYNVDQRDTDLDGVGDQCD
NCPMAHNPDQEDSDSDRIGDECDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDAC
DHDDDNDGIPDDKDNCRLVANPDQTDTDGDGRGDACKDDFDHDSVPDIDDICPENVDISE
TDFRRFQMVPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFFI
NTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPGE
HLRNALWHTGNTAGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKIMAD
SGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDP
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggagctatcaggaggactctttctcctcctaatgctaggtgtctacggaacaaaccag
atcccagagtctggaggagatgataacagcgtatttgatctctttgaactcattggcttc
actcgcaagggaggcggacgccgggcaacaggagtccacttggtgaagggacctgagccg
tccagtccagcttaccgcattgaggatgccagccgcatccctgccgtgcctgatgacaag
ttccaagatttgctggatgccatctatgctgagaagggcttcatcttgctggctactctc
cggcaagccaagaagagccggggcacactgctggctgtggagcgtaaacatagctcaggc
catatcttcaacctggtgtctaatggcaaggcaggcaccctggacctgagcctgtccggt
gacgggaagcagcaggtcgtgtcagtggaggacgccttgctagccactgggcactggaag
aacatcaccctgtttgtgcaggaggaccgggctcagctgtatgtagggtgtgagaaaatg
gagaatgctgaactggacatccccatccaaaacatcttcaccagggacttggccagcagt
gccaagctccgcattgccaagggtggtgtcaatgacaacttccagggagtgctgcagaat
gtgcggtttgtctttggaacaaccttggaagccatcctgaggaataaaggttgctccagc
tctactaatgcaattattacactggacaatgccatcaatggctctagcccagctatccgc
actaattacattggccacaaaacaaaggatatccaggcagtctgcggcttctcctgtgaa
gaacttacaaatatgtttgtggaaatgcaagggttgcggtccatggttacaacacttcaa
gacagagtgcgcaaagtgactgaagaaaatgaattgattgccagagtggtgcagatcact
cctggagtgtgtattcacaatggaattctgcacaaaaacaaagaagagtggactatcgat
agctgcactgaatgtacttgccagaattctgccaccatatgcaggaaagtgtcttgccct
ctcatgccttgttctaatgctactgttcccgatggtgaatgctgcccacgatgctggccc
agtgactatgcagaggatggctggtccccttggtcagagtggacttcatgctctgtgacc
tgtgggaatggggttcagcagagaggtcgttcttgtgacagtctcaataatcgctgtgaa
ggttcctctgtacagactcggacctgccacattcaggagtgtgataagagattcaaacag
gatggtggttggagccactggtcaccatggtcatcatgttctgttacctgtggcactggt
atgatcactagaatccgtctctgcaactctccagtcccacagttgaatggcaaaccatgt
gagggtgaagcaagggaaaccaaatcgtgccagaaagacccttgcccaataaatggaaac
tggggaccctggtcaccatgggacatatgtaccgtcacctgtggcggaggcattcaaaaa
catggacgtctttgcaatgaccctgagcctcagtacggtggaaaggactgtataggtgat
gctacaggggtgcgggtttgcaacaagcaggactgtcctattgatggatgtctgtctaat
ccctgctttgcgggaacaacatgcaccagctcccctgatggttcctggaagtgtggtgcc
tgccctactggttaccagggcaatggtgttcagtgcaaagatattgatgagtgtcaagag
gttcctgatacctgctttgtcctcggtggactacataggtgtgagaacactgaacctggg
tacaattgcttgccttgcccaccacgtttcactggaacacagccttttggccgaggcatt
gaggatgccacagctaacaaacaggtctgcaagccacgtaatccatgcacagatggaact
cacgactgcaacaagaatgccaagtgcaattaccttggccatttcagtgaccccatgtac
cgctgtgagtgtaaaccaggctatgctggcaatggtataatctgtggtgaagatacagat
ttagatggatggccaaatgaggaccttgtctgtgttgccaatgctacttaccactgcaaa
aaagataactgtcccaatcttcccaattctggccaagaagactatgataaggatggaatt
ggtgatgcctgtgatagtgatgatgataatgataacattccagatgacagggacaactgc
ccatttatttacaacccacagcagtatgactatgatagggatgatgttggtgaccgctgt
gataactgcccctatgatcataaccctgatcagacggacactgataacaatggagaagga
gatgcatgtgctgtggatattgatggagatggcattcttaatgaacaggataattgtcaa
tacatctacaatgtagaccagagagacacagatttggatggtgttggagatcagtgtgac
aactgccctatggcacacaatccagaccaggaggattctgactctgatcgcataggtgat
gaatgtgacaacaatcaggacatagatgaagacggccatcaaaataacctagataactgc
ccctatgtgcccaatgctaatcaagctgaccatgacaaggatggtaaaggtgatgcctgt
gaccatgatgatgacaatgatggtatccctgatgacaaagataactgcagactagttgcc
aacccagaccagactgacactgatggtgatggacggggagatgcttgcaaagatgacttt
gaccacgacagtgtgccagatattgatgacatctgtcctgagaatgttgacatcagcgag
acagatttccgtcgatttcagatggttcccctggatcctaagggaacatcacaaaatgat
cctaactgggtagttcgtcaccagggcaaagagctggttcaaactgtaaattgtgatcct
ggacttgcagtgggattcgatgaattcaatgctgtggacttcagtggcacattcttcatc
aatacagaaagggatgatgactatgctggctttgtgtttggttatcagtctagcagccgt
ttctatgtagtcatgtggaagcagatcactcagtcctattgggactcaacaccaaccaaa
gctcagggatactctggtctttctatcaaagttgtgaactccaccacaggtcctggagag
caccttcgaaatgctctgtggcacacaggaaacactgctgggcaggtacggaccttgtgg
catgaccctcgtcacataggctggaaagactttactgcctacagatggcgtcttagccac
agaccaaagacaggatacattagagttgtgatgtacgaagggaagaaaattatggctgat
tcagggcctatctacgacaaaacctatgctggtggtcggttaggattatttgtcttctct
caagaaatggtgttcttctcggatcttaaatatgaatgcagagatccataa
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integrated database retrieval system
